Hb_000110_200

Information

Type -
Description -
Location Contig110: 256819-263749
Sequence    

Annotation

kegg
ID rcu:RCOM_0353340
description hypothetical protein
nr
ID CBI27043.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9C6L8
description Aluminum-activated malate transporter 4 OS=Arabidopsis thaliana GN=ALMT4 PE=3 SV=1
trembl
ID F6HFP4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03290 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03058: 259024-259654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_200 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000718_040 0.1927818348 - - PREDICTED: lipase member N [Jatropha curcas]
3 Hb_000670_100 0.2000537055 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 3, chloroplastic-like [Jatropha curcas]
4 Hb_000307_070 0.2014965472 - - protein kinase, putative [Ricinus communis]
5 Hb_046823_010 0.2049556427 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
6 Hb_001437_280 0.2095008925 - - AMP dependent CoA ligase, putative [Ricinus communis]
7 Hb_000070_110 0.2169249571 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
8 Hb_007416_110 0.2173074922 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
9 Hb_002529_090 0.2202396168 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
10 Hb_005227_040 0.2212811636 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
11 Hb_001269_370 0.2241637969 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
12 Hb_000139_340 0.2253169817 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005656_170 0.2261284219 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
14 Hb_005015_110 0.2270522454 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
15 Hb_004291_040 0.2278414104 - - hexokinase [Manihot esculenta]
16 Hb_003124_110 0.2280242266 - - hypothetical protein VITISV_026680 [Vitis vinifera]
17 Hb_139848_010 0.2310904842 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
18 Hb_000890_080 0.2314149882 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_000923_060 0.2325283507 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
20 Hb_002486_060 0.2331776393 - - hypothetical protein JCGZ_01211 [Jatropha curcas]

Gene co-expression network

sample Hb_000110_200 Hb_000110_200 Hb_000718_040 Hb_000718_040 Hb_000110_200--Hb_000718_040 Hb_000670_100 Hb_000670_100 Hb_000110_200--Hb_000670_100 Hb_000307_070 Hb_000307_070 Hb_000110_200--Hb_000307_070 Hb_046823_010 Hb_046823_010 Hb_000110_200--Hb_046823_010 Hb_001437_280 Hb_001437_280 Hb_000110_200--Hb_001437_280 Hb_000070_110 Hb_000070_110 Hb_000110_200--Hb_000070_110 Hb_000189_150 Hb_000189_150 Hb_000718_040--Hb_000189_150 Hb_002374_300 Hb_002374_300 Hb_000718_040--Hb_002374_300 Hb_000820_140 Hb_000820_140 Hb_000718_040--Hb_000820_140 Hb_001322_230 Hb_001322_230 Hb_000718_040--Hb_001322_230 Hb_005489_090 Hb_005489_090 Hb_000718_040--Hb_005489_090 Hb_005917_020 Hb_005917_020 Hb_000718_040--Hb_005917_020 Hb_004108_060 Hb_004108_060 Hb_000670_100--Hb_004108_060 Hb_000297_150 Hb_000297_150 Hb_000670_100--Hb_000297_150 Hb_012627_040 Hb_012627_040 Hb_000670_100--Hb_012627_040 Hb_000282_080 Hb_000282_080 Hb_000670_100--Hb_000282_080 Hb_004241_020 Hb_004241_020 Hb_000670_100--Hb_004241_020 Hb_011310_080 Hb_011310_080 Hb_000670_100--Hb_011310_080 Hb_001587_040 Hb_001587_040 Hb_000307_070--Hb_001587_040 Hb_000307_070--Hb_000820_140 Hb_000334_050 Hb_000334_050 Hb_000307_070--Hb_000334_050 Hb_000189_130 Hb_000189_130 Hb_000307_070--Hb_000189_130 Hb_000307_070--Hb_005917_020 Hb_000310_060 Hb_000310_060 Hb_000307_070--Hb_000310_060 Hb_007416_110 Hb_007416_110 Hb_046823_010--Hb_007416_110 Hb_000049_110 Hb_000049_110 Hb_046823_010--Hb_000049_110 Hb_000525_050 Hb_000525_050 Hb_046823_010--Hb_000525_050 Hb_003531_070 Hb_003531_070 Hb_046823_010--Hb_003531_070 Hb_003040_030 Hb_003040_030 Hb_046823_010--Hb_003040_030 Hb_000139_340 Hb_000139_340 Hb_046823_010--Hb_000139_340 Hb_007621_010 Hb_007621_010 Hb_001437_280--Hb_007621_010 Hb_001437_280--Hb_000820_140 Hb_001437_280--Hb_000718_040 Hb_020437_020 Hb_020437_020 Hb_001437_280--Hb_020437_020 Hb_003055_110 Hb_003055_110 Hb_001437_280--Hb_003055_110 Hb_002486_060 Hb_002486_060 Hb_001437_280--Hb_002486_060 Hb_000130_200 Hb_000130_200 Hb_000070_110--Hb_000130_200 Hb_002529_090 Hb_002529_090 Hb_000070_110--Hb_002529_090 Hb_178968_080 Hb_178968_080 Hb_000070_110--Hb_178968_080 Hb_002232_160 Hb_002232_160 Hb_000070_110--Hb_002232_160 Hb_000032_600 Hb_000032_600 Hb_000070_110--Hb_000032_600 Hb_000890_080 Hb_000890_080 Hb_000070_110--Hb_000890_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233348 0.642528 1.16146 0.286105 0.0747609 0.0316959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.899226 0.322599 0.53823 0.771461 1.60107

CAGE analysis