Hb_000359_200

Information

Type -
Description -
Location Contig359: 221168-223877
Sequence    

Annotation

kegg
ID rcu:RCOM_0696260
description triacylglycerol lipase, putative
nr
ID XP_002526649.1
description triacylglycerol lipase, putative [Ricinus communis]
swissprot
ID Q680C0
description GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1
trembl
ID B9SKY0
description Triacylglycerol lipase, putative OS=Ricinus communis GN=RCOM_0696260 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gdsl esterase lipase at4g10955-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37060: 222184-223786 , PASA_asmbl_37061: 224872-226839
cDNA
(Sanger)
(ID:Location)		 026_M22.ab1: 224872-225387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_200 0.0 - - triacylglycerol lipase, putative [Ricinus communis]
2 Hb_004195_140 0.1564746309 - - Sec14 cytosolic factor, putative [Ricinus communis]
3 Hb_000331_570 0.1602410751 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
4 Hb_000088_240 0.1631867215 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_000331_420 0.1642992424 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
6 Hb_001232_090 0.1745726006 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
7 Hb_038044_010 0.1814754737 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
8 Hb_000406_030 0.1817425729 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
9 Hb_002942_120 0.1817748056 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_004163_030 0.1832175635 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
11 Hb_005901_030 0.1838051771 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
12 Hb_005903_020 0.184650393 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
13 Hb_009288_030 0.1852876661 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
14 Hb_002540_070 0.1857160348 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
15 Hb_007123_080 0.1874797146 - - big map kinase/bmk, putative [Ricinus communis]
16 Hb_000526_010 0.1877681494 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
17 Hb_003784_040 0.1908845135 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
18 Hb_005527_060 0.1909792438 - - malic enzyme, putative [Ricinus communis]
19 Hb_000211_100 0.191649481 - - PREDICTED: biotin synthase [Jatropha curcas]
20 Hb_011828_040 0.1920190218 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_200 Hb_000359_200 Hb_004195_140 Hb_004195_140 Hb_000359_200--Hb_004195_140 Hb_000331_570 Hb_000331_570 Hb_000359_200--Hb_000331_570 Hb_000088_240 Hb_000088_240 Hb_000359_200--Hb_000088_240 Hb_000331_420 Hb_000331_420 Hb_000359_200--Hb_000331_420 Hb_001232_090 Hb_001232_090 Hb_000359_200--Hb_001232_090 Hb_038044_010 Hb_038044_010 Hb_000359_200--Hb_038044_010 Hb_002045_090 Hb_002045_090 Hb_004195_140--Hb_002045_090 Hb_000230_190 Hb_000230_190 Hb_004195_140--Hb_000230_190 Hb_001377_530 Hb_001377_530 Hb_004195_140--Hb_001377_530 Hb_001141_050 Hb_001141_050 Hb_004195_140--Hb_001141_050 Hb_000792_050 Hb_000792_050 Hb_004195_140--Hb_000792_050 Hb_002942_120 Hb_002942_120 Hb_004195_140--Hb_002942_120 Hb_000331_570--Hb_000331_420 Hb_002871_040 Hb_002871_040 Hb_000331_570--Hb_002871_040 Hb_002627_040 Hb_002627_040 Hb_000331_570--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_000331_570--Hb_101334_020 Hb_001390_100 Hb_001390_100 Hb_000331_570--Hb_001390_100 Hb_070624_010 Hb_070624_010 Hb_000331_570--Hb_070624_010 Hb_000935_080 Hb_000935_080 Hb_000088_240--Hb_000935_080 Hb_000120_300 Hb_000120_300 Hb_000088_240--Hb_000120_300 Hb_001123_310 Hb_001123_310 Hb_000088_240--Hb_001123_310 Hb_000088_240--Hb_001377_530 Hb_001117_080 Hb_001117_080 Hb_000088_240--Hb_001117_080 Hb_005527_060 Hb_005527_060 Hb_000088_240--Hb_005527_060 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_005214_170 Hb_005214_170 Hb_000331_420--Hb_005214_170 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_001501_070 Hb_001501_070 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_024973_020 Hb_024973_020 Hb_038044_010--Hb_024973_020 Hb_001478_020 Hb_001478_020 Hb_038044_010--Hb_001478_020 Hb_038044_010--Hb_002942_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.616587 0.928012 10.9872 3.28389 0.237803 0.889811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96418 0.320689 1.41531 3.11399 2.12029

CAGE analysis