Hb_000329_480

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig329: 343140-344035
Sequence    

Annotation

kegg
ID rcu:RCOM_1609660
description GATA transcription factor, putative
nr
ID XP_012083638.1
description PREDICTED: GATA transcription factor 4 [Jatropha curcas]
swissprot
ID O49741
description GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1
trembl
ID A0A067K962
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14581 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34550: 343022-344186
cDNA
(Sanger)
(ID:Location)		 010_G04.ab1: 343808-344178 , 015_B13.ab1: 343418-344186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_480 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 4 [Jatropha curcas]
2 Hb_009486_210 0.2010837756 - - -
3 Hb_089140_090 0.22549478 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
4 Hb_000563_440 0.2376837365 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
5 Hb_000152_210 0.2389477814 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008768_020 0.2437471058 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
7 Hb_005375_050 0.2440713644 - - inorganic pyrophosphatase, putative [Ricinus communis]
8 Hb_002045_190 0.2441839764 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
9 Hb_033594_040 0.2442103103 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
10 Hb_001975_130 0.2448485352 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
11 Hb_004125_060 0.2461434788 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004116_120 0.2464925023 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
13 Hb_004920_070 0.2476601421 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_008173_060 0.249450618 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
15 Hb_001114_170 0.2504300846 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003147_070 0.2511824728 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
17 Hb_100790_010 0.2528617868 - - conserved hypothetical protein [Ricinus communis]
18 Hb_015807_160 0.253684327 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
19 Hb_004452_090 0.2544557753 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
20 Hb_003399_100 0.2547878941 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_480 Hb_000329_480 Hb_009486_210 Hb_009486_210 Hb_000329_480--Hb_009486_210 Hb_089140_090 Hb_089140_090 Hb_000329_480--Hb_089140_090 Hb_000563_440 Hb_000563_440 Hb_000329_480--Hb_000563_440 Hb_000152_210 Hb_000152_210 Hb_000329_480--Hb_000152_210 Hb_008768_020 Hb_008768_020 Hb_000329_480--Hb_008768_020 Hb_005375_050 Hb_005375_050 Hb_000329_480--Hb_005375_050 Hb_007741_130 Hb_007741_130 Hb_009486_210--Hb_007741_130 Hb_100790_010 Hb_100790_010 Hb_009486_210--Hb_100790_010 Hb_005245_120 Hb_005245_120 Hb_009486_210--Hb_005245_120 Hb_015807_160 Hb_015807_160 Hb_009486_210--Hb_015807_160 Hb_000025_370 Hb_000025_370 Hb_009486_210--Hb_000025_370 Hb_146255_020 Hb_146255_020 Hb_009486_210--Hb_146255_020 Hb_001114_170 Hb_001114_170 Hb_089140_090--Hb_001114_170 Hb_033594_040 Hb_033594_040 Hb_089140_090--Hb_033594_040 Hb_002027_440 Hb_002027_440 Hb_089140_090--Hb_002027_440 Hb_089140_090--Hb_000563_440 Hb_089140_090--Hb_015807_160 Hb_002045_190 Hb_002045_190 Hb_089140_090--Hb_002045_190 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_001450_030 Hb_001450_030 Hb_000152_210--Hb_001450_030 Hb_000189_540 Hb_000189_540 Hb_000152_210--Hb_000189_540 Hb_007441_170 Hb_007441_170 Hb_000152_210--Hb_007441_170 Hb_000152_210--Hb_015807_160 Hb_000352_200 Hb_000352_200 Hb_000152_210--Hb_000352_200 Hb_000155_090 Hb_000155_090 Hb_000152_210--Hb_000155_090 Hb_005701_110 Hb_005701_110 Hb_008768_020--Hb_005701_110 Hb_003147_070 Hb_003147_070 Hb_008768_020--Hb_003147_070 Hb_000529_280 Hb_000529_280 Hb_008768_020--Hb_000529_280 Hb_005181_160 Hb_005181_160 Hb_008768_020--Hb_005181_160 Hb_000057_140 Hb_000057_140 Hb_008768_020--Hb_000057_140 Hb_008768_020--Hb_000025_370 Hb_003399_100 Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_005375_050--Hb_002045_190 Hb_089889_010 Hb_089889_010 Hb_005375_050--Hb_089889_010 Hb_014720_010 Hb_014720_010 Hb_005375_050--Hb_014720_010 Hb_004116_120 Hb_004116_120 Hb_005375_050--Hb_004116_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41502 1.1874 5.71842 1.40773 0.112914 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136101 2.88941 0.773869 0.649877 0.536712

CAGE analysis