Hb_009486_210

Information

Type -
Description -
Location Contig9486: 170398-171317
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63377: 170503-171298 , PASA_asmbl_63378: 170784-171258
cDNA
(Sanger)
(ID:Location)		 042_N12.ab1: 170552-171298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_210 0.0 - - -
2 Hb_007741_130 0.1314169814 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
3 Hb_100790_010 0.1378699422 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005245_120 0.1409537046 - - XPA-binding protein, putative [Ricinus communis]
5 Hb_015807_160 0.1431031925 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
6 Hb_000025_370 0.1476995206 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
7 Hb_146255_020 0.1602725225 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
8 Hb_002028_090 0.1603399929 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
9 Hb_004984_030 0.1612719728 - - protein with unknown function [Ricinus communis]
10 Hb_000282_050 0.1615089819 - - calcineurin B, putative [Ricinus communis]
11 Hb_010812_020 0.1639207209 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_000369_010 0.1644315745 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001191_080 0.1663044683 - - protein with unknown function [Ricinus communis]
14 Hb_006210_020 0.1663571669 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
15 Hb_001454_070 0.1667409563 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
16 Hb_089140_090 0.1672000043 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
17 Hb_023765_020 0.1673663006 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
18 Hb_000905_120 0.1677366684 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
19 Hb_001804_080 0.1682104385 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
20 Hb_001804_090 0.168978242 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_210 Hb_009486_210 Hb_007741_130 Hb_007741_130 Hb_009486_210--Hb_007741_130 Hb_100790_010 Hb_100790_010 Hb_009486_210--Hb_100790_010 Hb_005245_120 Hb_005245_120 Hb_009486_210--Hb_005245_120 Hb_015807_160 Hb_015807_160 Hb_009486_210--Hb_015807_160 Hb_000025_370 Hb_000025_370 Hb_009486_210--Hb_000025_370 Hb_146255_020 Hb_146255_020 Hb_009486_210--Hb_146255_020 Hb_001191_080 Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_007741_130--Hb_005245_120 Hb_001863_160 Hb_001863_160 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_010080_010 Hb_010080_010 Hb_100790_010--Hb_010080_010 Hb_100790_010--Hb_146255_020 Hb_006061_040 Hb_006061_040 Hb_100790_010--Hb_006061_040 Hb_000120_250 Hb_000120_250 Hb_100790_010--Hb_000120_250 Hb_001950_070 Hb_001950_070 Hb_100790_010--Hb_001950_070 Hb_001500_120 Hb_001500_120 Hb_100790_010--Hb_001500_120 Hb_032202_100 Hb_032202_100 Hb_005245_120--Hb_032202_100 Hb_000926_200 Hb_000926_200 Hb_005245_120--Hb_000926_200 Hb_001804_080 Hb_001804_080 Hb_005245_120--Hb_001804_080 Hb_000116_490 Hb_000116_490 Hb_005245_120--Hb_000116_490 Hb_001357_310 Hb_001357_310 Hb_005245_120--Hb_001357_310 Hb_005245_120--Hb_001191_080 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_001863_070 Hb_001863_070 Hb_015807_160--Hb_001863_070 Hb_001767_060 Hb_001767_060 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170 Hb_000025_370--Hb_002028_090 Hb_002671_090 Hb_002671_090 Hb_000025_370--Hb_002671_090 Hb_118282_010 Hb_118282_010 Hb_000025_370--Hb_118282_010 Hb_011053_010 Hb_011053_010 Hb_000025_370--Hb_011053_010 Hb_005181_160 Hb_005181_160 Hb_000025_370--Hb_005181_160 Hb_004984_030 Hb_004984_030 Hb_000025_370--Hb_004984_030 Hb_146255_020--Hb_006061_040 Hb_004807_020 Hb_004807_020 Hb_146255_020--Hb_004807_020 Hb_002343_040 Hb_002343_040 Hb_146255_020--Hb_002343_040 Hb_001025_090 Hb_001025_090 Hb_146255_020--Hb_001025_090 Hb_001105_170 Hb_001105_170 Hb_146255_020--Hb_001105_170 Hb_001804_090 Hb_001804_090 Hb_146255_020--Hb_001804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.64 90.9679 352.344 170.01 39.5721 30.0689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.4518 240.322 61.7434 72.9158 43.3836

CAGE analysis