Hb_000212_460

Information

Type -
Description -
Location Contig212: 460447-463443
Sequence    

Annotation

kegg
ID rcu:RCOM_1078410
description ankyrin repeat-containing protein, putative
nr
ID XP_012085905.1
description PREDICTED: ankyrin-1-like [Jatropha curcas]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9RM71
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1078410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21995: 462894-463137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_460 0.0 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
2 Hb_033152_020 0.0943275505 - - hypothetical protein VITISV_000649 [Vitis vinifera]
3 Hb_002271_010 0.0992519046 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
4 Hb_002046_010 0.1164001127 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010921_050 0.1185336689 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
6 Hb_001269_650 0.1192883201 - - transporter, putative [Ricinus communis]
7 Hb_004724_410 0.1200863017 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
8 Hb_002232_360 0.1207732816 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
9 Hb_002053_150 0.1240193968 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
10 Hb_003292_030 0.126215157 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
11 Hb_000165_040 0.1271753457 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
12 Hb_002400_340 0.1272894727 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_001009_280 0.1287327593 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
14 Hb_000510_340 0.1329936532 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
15 Hb_003494_230 0.1338242587 - - starch synthase isoform II [Manihot esculenta]
16 Hb_000006_040 0.1351842053 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_001671_100 0.13547775 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
18 Hb_002439_010 0.1360492522 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
19 Hb_003647_130 0.136507354 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
20 Hb_000075_040 0.1365084086 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000212_460 Hb_000212_460 Hb_033152_020 Hb_033152_020 Hb_000212_460--Hb_033152_020 Hb_002271_010 Hb_002271_010 Hb_000212_460--Hb_002271_010 Hb_002046_010 Hb_002046_010 Hb_000212_460--Hb_002046_010 Hb_010921_050 Hb_010921_050 Hb_000212_460--Hb_010921_050 Hb_001269_650 Hb_001269_650 Hb_000212_460--Hb_001269_650 Hb_004724_410 Hb_004724_410 Hb_000212_460--Hb_004724_410 Hb_015026_110 Hb_015026_110 Hb_033152_020--Hb_015026_110 Hb_010021_010 Hb_010021_010 Hb_033152_020--Hb_010021_010 Hb_033152_020--Hb_002271_010 Hb_001009_280 Hb_001009_280 Hb_033152_020--Hb_001009_280 Hb_002053_150 Hb_002053_150 Hb_033152_020--Hb_002053_150 Hb_002232_360 Hb_002232_360 Hb_002271_010--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002271_010--Hb_001671_100 Hb_002534_120 Hb_002534_120 Hb_002271_010--Hb_002534_120 Hb_002400_340 Hb_002400_340 Hb_002271_010--Hb_002400_340 Hb_111036_010 Hb_111036_010 Hb_002271_010--Hb_111036_010 Hb_000905_110 Hb_000905_110 Hb_002271_010--Hb_000905_110 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_002046_010--Hb_001009_280 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_183510_020 Hb_183510_020 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_005333_050 Hb_005333_050 Hb_002046_010--Hb_005333_050 Hb_000477_050 Hb_000477_050 Hb_010921_050--Hb_000477_050 Hb_010921_050--Hb_183510_020 Hb_001828_180 Hb_001828_180 Hb_010921_050--Hb_001828_180 Hb_010921_050--Hb_002400_340 Hb_001301_150 Hb_001301_150 Hb_010921_050--Hb_001301_150 Hb_000120_280 Hb_000120_280 Hb_010921_050--Hb_000120_280 Hb_011224_160 Hb_011224_160 Hb_001269_650--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_001269_650--Hb_021576_010 Hb_000190_090 Hb_000190_090 Hb_001269_650--Hb_000190_090 Hb_028960_030 Hb_028960_030 Hb_001269_650--Hb_028960_030 Hb_001269_650--Hb_000979_220 Hb_000510_340 Hb_000510_340 Hb_001269_650--Hb_000510_340 Hb_000025_270 Hb_000025_270 Hb_004724_410--Hb_000025_270 Hb_001623_280 Hb_001623_280 Hb_004724_410--Hb_001623_280 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_003020_030 Hb_003020_030 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_003292_030 Hb_003292_030 Hb_004724_410--Hb_003292_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.74312 0.694213 1.03716 0.561791 0.974662 0.742634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.37097 1.29525 0.553143 1.96008 1.11726

CAGE analysis