Hb_033152_020

Information

Type -
Description -
Location Contig33152: 8146-21488
Sequence    

Annotation

kegg
ID rcu:RCOM_0939580
description Gibberellin 20 oxidase, putative (EC:1.14.11.23)
nr
ID CAN83262.1
description hypothetical protein VITISV_000649 [Vitis vinifera]
swissprot
ID O80477
description Methylesterase 3 OS=Arabidopsis thaliana GN=MES3 PE=2 SV=1
trembl
ID A5BHZ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000649 PE=4 SV=1
Gene Ontology
ID GO:0005506
description flavonol synthase flavanone 3-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34839: 17029-19111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_020 0.0 - - hypothetical protein VITISV_000649 [Vitis vinifera]
2 Hb_000212_460 0.0943275505 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
3 Hb_015026_110 0.1411499502 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
4 Hb_010021_010 0.1425015036 - - unnamed protein product [Coffea canephora]
5 Hb_002271_010 0.147861694 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
6 Hb_001009_280 0.1485827306 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
7 Hb_002053_150 0.1499866888 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
8 Hb_000935_010 0.1502807964 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
9 Hb_164544_010 0.1506470203 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
10 Hb_000077_320 0.154180382 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
11 Hb_004724_410 0.1542210825 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
12 Hb_002477_090 0.1546101435 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
13 Hb_001232_010 0.154733316 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
14 Hb_001431_120 0.1553138021 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
15 Hb_012146_050 0.1566239857 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
16 Hb_002046_010 0.1580713453 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003058_060 0.1589923459 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
18 Hb_000603_030 0.1604822903 - - Ribonuclease III, putative [Ricinus communis]
19 Hb_003581_250 0.1604847824 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
20 Hb_001098_050 0.1606701586 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]

Gene co-expression network

sample Hb_033152_020 Hb_033152_020 Hb_000212_460 Hb_000212_460 Hb_033152_020--Hb_000212_460 Hb_015026_110 Hb_015026_110 Hb_033152_020--Hb_015026_110 Hb_010021_010 Hb_010021_010 Hb_033152_020--Hb_010021_010 Hb_002271_010 Hb_002271_010 Hb_033152_020--Hb_002271_010 Hb_001009_280 Hb_001009_280 Hb_033152_020--Hb_001009_280 Hb_002053_150 Hb_002053_150 Hb_033152_020--Hb_002053_150 Hb_000212_460--Hb_002271_010 Hb_002046_010 Hb_002046_010 Hb_000212_460--Hb_002046_010 Hb_010921_050 Hb_010921_050 Hb_000212_460--Hb_010921_050 Hb_001269_650 Hb_001269_650 Hb_000212_460--Hb_001269_650 Hb_004724_410 Hb_004724_410 Hb_000212_460--Hb_004724_410 Hb_005048_100 Hb_005048_100 Hb_015026_110--Hb_005048_100 Hb_015026_110--Hb_010021_010 Hb_001232_010 Hb_001232_010 Hb_015026_110--Hb_001232_010 Hb_000900_030 Hb_000900_030 Hb_015026_110--Hb_000900_030 Hb_001529_040 Hb_001529_040 Hb_015026_110--Hb_001529_040 Hb_002477_090 Hb_002477_090 Hb_015026_110--Hb_002477_090 Hb_000106_120 Hb_000106_120 Hb_010021_010--Hb_000106_120 Hb_002005_080 Hb_002005_080 Hb_010021_010--Hb_002005_080 Hb_010021_010--Hb_001232_010 Hb_010021_010--Hb_002477_090 Hb_010021_010--Hb_005048_100 Hb_002232_360 Hb_002232_360 Hb_002271_010--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002271_010--Hb_001671_100 Hb_002534_120 Hb_002534_120 Hb_002271_010--Hb_002534_120 Hb_002400_340 Hb_002400_340 Hb_002271_010--Hb_002400_340 Hb_111036_010 Hb_111036_010 Hb_002271_010--Hb_111036_010 Hb_000905_110 Hb_000905_110 Hb_002271_010--Hb_000905_110 Hb_000321_140 Hb_000321_140 Hb_001009_280--Hb_000321_140 Hb_183510_020 Hb_183510_020 Hb_001009_280--Hb_183510_020 Hb_002055_020 Hb_002055_020 Hb_001009_280--Hb_002055_020 Hb_001009_280--Hb_002046_010 Hb_000617_230 Hb_000617_230 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010 Hb_001998_240 Hb_001998_240 Hb_002053_150--Hb_001998_240 Hb_006816_280 Hb_006816_280 Hb_002053_150--Hb_006816_280 Hb_003228_110 Hb_003228_110 Hb_002053_150--Hb_003228_110 Hb_003411_040 Hb_003411_040 Hb_002053_150--Hb_003411_040 Hb_003494_230 Hb_003494_230 Hb_002053_150--Hb_003494_230 Hb_001541_290 Hb_001541_290 Hb_002053_150--Hb_001541_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.390116 0.432151 0.605122 0.249509 0.586625 0.659179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107931 0.605161 0.386301 1.23333 0.498949

CAGE analysis