Hb_001541_290

Information

Type -
Description -
Location Contig1541: 270662-282642
Sequence    

Annotation

kegg
ID cit:102608642
description uncharacterized LOC102608642
nr
ID XP_012085873.1
description PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
swissprot
ID Q9FXA7
description UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 OS=Arabidopsis thaliana GN=RGXT3 PE=1 SV=1
trembl
ID V4SUJ0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033870mg PE=4 SV=1
Gene Ontology
ID GO:0005794
description udp-galactose:fucoside alpha-3-galactosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13319: 272420-272786 , PASA_asmbl_13320: 279183-280772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_290 0.0 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
2 Hb_003494_230 0.0681675668 - - starch synthase isoform II [Manihot esculenta]
3 Hb_002053_150 0.0803676276 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
4 Hb_002675_130 0.0812316832 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
5 Hb_003228_110 0.0840172571 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
6 Hb_001946_290 0.0872960416 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
7 Hb_001998_240 0.0889836992 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
8 Hb_002456_010 0.089983385 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
9 Hb_006816_280 0.0912960808 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
10 Hb_002007_080 0.0924244458 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
11 Hb_023771_010 0.0958376559 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
12 Hb_022256_020 0.0959778927 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
13 Hb_027472_070 0.098592253 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
14 Hb_010863_010 0.0986193548 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
15 Hb_001635_190 0.0998479259 - - RNA m5u methyltransferase, putative [Ricinus communis]
16 Hb_010422_010 0.1000031521 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_004787_050 0.1007997916 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
18 Hb_050847_050 0.1011682227 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
19 Hb_000922_250 0.1030674954 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000111_290 0.1048945079 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]

Gene co-expression network

sample Hb_001541_290 Hb_001541_290 Hb_003494_230 Hb_003494_230 Hb_001541_290--Hb_003494_230 Hb_002053_150 Hb_002053_150 Hb_001541_290--Hb_002053_150 Hb_002675_130 Hb_002675_130 Hb_001541_290--Hb_002675_130 Hb_003228_110 Hb_003228_110 Hb_001541_290--Hb_003228_110 Hb_001946_290 Hb_001946_290 Hb_001541_290--Hb_001946_290 Hb_001998_240 Hb_001998_240 Hb_001541_290--Hb_001998_240 Hb_003494_230--Hb_002053_150 Hb_008033_040 Hb_008033_040 Hb_003494_230--Hb_008033_040 Hb_001671_100 Hb_001671_100 Hb_003494_230--Hb_001671_100 Hb_070256_010 Hb_070256_010 Hb_003494_230--Hb_070256_010 Hb_003494_230--Hb_001998_240 Hb_002053_150--Hb_001998_240 Hb_006816_280 Hb_006816_280 Hb_002053_150--Hb_006816_280 Hb_002053_150--Hb_003228_110 Hb_003411_040 Hb_003411_040 Hb_002053_150--Hb_003411_040 Hb_002234_090 Hb_002234_090 Hb_002675_130--Hb_002234_090 Hb_022256_020 Hb_022256_020 Hb_002675_130--Hb_022256_020 Hb_004787_050 Hb_004787_050 Hb_002675_130--Hb_004787_050 Hb_002675_130--Hb_001998_240 Hb_004916_010 Hb_004916_010 Hb_002675_130--Hb_004916_010 Hb_011618_070 Hb_011618_070 Hb_002675_130--Hb_011618_070 Hb_002007_080 Hb_002007_080 Hb_003228_110--Hb_002007_080 Hb_002071_070 Hb_002071_070 Hb_003228_110--Hb_002071_070 Hb_000778_010 Hb_000778_010 Hb_003228_110--Hb_000778_010 Hb_003228_110--Hb_001998_240 Hb_002456_010 Hb_002456_010 Hb_003228_110--Hb_002456_010 Hb_000041_110 Hb_000041_110 Hb_001946_290--Hb_000041_110 Hb_001235_150 Hb_001235_150 Hb_001946_290--Hb_001235_150 Hb_004254_090 Hb_004254_090 Hb_001946_290--Hb_004254_090 Hb_002631_030 Hb_002631_030 Hb_001946_290--Hb_002631_030 Hb_002518_260 Hb_002518_260 Hb_001946_290--Hb_002518_260 Hb_001998_240--Hb_006816_280 Hb_001998_240--Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_001998_240--Hb_003058_260 Hb_003943_110 Hb_003943_110 Hb_001998_240--Hb_003943_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.850338 1.52508 1.19927 0.71987 0.788961 0.804654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.987338 1.39714 1.66696 2.08518 1.33102

CAGE analysis