Hb_000163_270

Information

Type -
Description -
Location Contig163: 183546-185769
Sequence    

Annotation

kegg
ID rcu:RCOM_1177920
description hypothetical protein
nr
ID XP_012082745.1
description PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
swissprot
ID Q57951
description Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0531 PE=3 SV=1
trembl
ID A0A067JZC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13919 PE=4 SV=1
Gene Ontology
ID GO:0005773
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14846: 183537-185783
cDNA
(Sanger)
(ID:Location)		 040_M16.ab1: 183534-185772 , 050_O20.ab1: 184130-185783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_270 0.0 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
2 Hb_010809_010 0.0934297716 - - Na+/H+ antiporter [Populus euphratica]
3 Hb_004109_380 0.1040569443 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
4 Hb_001105_160 0.1086670533 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
5 Hb_006910_060 0.1134913178 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
6 Hb_000105_040 0.1173917332 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
7 Hb_000049_150 0.118342803 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_000571_160 0.1208575295 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
9 Hb_000406_110 0.1210335747 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
10 Hb_002284_250 0.1225895299 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
11 Hb_000243_300 0.1233219083 - - catalytic, putative [Ricinus communis]
12 Hb_011828_030 0.1266159499 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
13 Hb_001935_140 0.1273315083 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
14 Hb_032808_030 0.1280471333 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_001123_050 0.1286902309 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007186_020 0.1291369217 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
17 Hb_002307_280 0.1303406303 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
18 Hb_075315_010 0.1304754105 - - ornithine aminotransferase [Camellia sinensis]
19 Hb_000479_240 0.1305450773 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
20 Hb_001699_280 0.1305690221 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_000163_270 Hb_000163_270 Hb_010809_010 Hb_010809_010 Hb_000163_270--Hb_010809_010 Hb_004109_380 Hb_004109_380 Hb_000163_270--Hb_004109_380 Hb_001105_160 Hb_001105_160 Hb_000163_270--Hb_001105_160 Hb_006910_060 Hb_006910_060 Hb_000163_270--Hb_006910_060 Hb_000105_040 Hb_000105_040 Hb_000163_270--Hb_000105_040 Hb_000049_150 Hb_000049_150 Hb_000163_270--Hb_000049_150 Hb_010809_010--Hb_000105_040 Hb_010809_010--Hb_000049_150 Hb_010809_010--Hb_001105_160 Hb_005568_040 Hb_005568_040 Hb_010809_010--Hb_005568_040 Hb_012055_040 Hb_012055_040 Hb_010809_010--Hb_012055_040 Hb_000479_240 Hb_000479_240 Hb_010809_010--Hb_000479_240 Hb_001031_090 Hb_001031_090 Hb_004109_380--Hb_001031_090 Hb_004223_160 Hb_004223_160 Hb_004109_380--Hb_004223_160 Hb_000571_160 Hb_000571_160 Hb_004109_380--Hb_000571_160 Hb_004109_380--Hb_000105_040 Hb_002005_030 Hb_002005_030 Hb_004109_380--Hb_002005_030 Hb_001699_280 Hb_001699_280 Hb_004109_380--Hb_001699_280 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_006573_210 Hb_006573_210 Hb_006910_060--Hb_006573_210 Hb_006910_060--Hb_000479_240 Hb_001167_050 Hb_001167_050 Hb_006910_060--Hb_001167_050 Hb_000579_130 Hb_000579_130 Hb_006910_060--Hb_000579_130 Hb_031527_030 Hb_031527_030 Hb_006910_060--Hb_031527_030 Hb_000069_480 Hb_000069_480 Hb_006910_060--Hb_000069_480 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_001699_280 Hb_003581_170 Hb_003581_170 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_000049_150--Hb_000571_160 Hb_000049_150--Hb_004109_380 Hb_000170_100 Hb_000170_100 Hb_000049_150--Hb_000170_100 Hb_000049_150--Hb_000105_040 Hb_006531_020 Hb_006531_020 Hb_000049_150--Hb_006531_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6788 83.9454 15.9436 71.72 54.8545 58.8778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0243 27.4013 17.064 78.3641 43.6845

CAGE analysis