Hb_000162_270

Information

Type -
Description -
Location Contig162: 384096-385761
Sequence    

Annotation

kegg
ID egr:104442671
description uncharacterized LOC104442671
nr
ID XP_010054376.1
description PREDICTED: uncharacterized protein LOC104442671 [Eucalyptus grandis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5XQU3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018001mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_270 0.0 - - PREDICTED: uncharacterized protein LOC104442671 [Eucalyptus grandis]
2 Hb_007403_070 0.2523420406 - - hypothetical protein JCGZ_23672 [Jatropha curcas]
3 Hb_179286_010 0.2533162788 - - STRUWWELPETER family protein [Populus trichocarpa]
4 Hb_004218_100 0.2675161953 - - PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]
5 Hb_001621_120 0.2830727842 - - Zeamatin precursor, putative [Ricinus communis]
6 Hb_005843_020 0.2844453231 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_000359_300 0.2866890944 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
8 Hb_002641_170 0.2882044574 - - zinc finger protein, putative [Ricinus communis]
9 Hb_011287_040 0.2952280986 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
10 Hb_007210_020 0.2957782502 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
11 Hb_158296_010 0.2976606608 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_001486_050 0.3007477539 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
13 Hb_000134_100 0.3037749168 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
14 Hb_000100_060 0.3085781395 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
15 Hb_006816_240 0.3095879114 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
16 Hb_007741_090 0.3101757626 - - Autophagy-related 8f -like protein [Gossypium arboreum]
17 Hb_012675_020 0.313138757 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
18 Hb_001916_010 0.3134389616 - - hypothetical protein VITISV_021527 [Vitis vinifera]
19 Hb_007575_090 0.3156359429 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
20 Hb_000156_150 0.3166523071 - - hypothetical protein JCGZ_04603 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_270 Hb_000162_270 Hb_007403_070 Hb_007403_070 Hb_000162_270--Hb_007403_070 Hb_179286_010 Hb_179286_010 Hb_000162_270--Hb_179286_010 Hb_004218_100 Hb_004218_100 Hb_000162_270--Hb_004218_100 Hb_001621_120 Hb_001621_120 Hb_000162_270--Hb_001621_120 Hb_005843_020 Hb_005843_020 Hb_000162_270--Hb_005843_020 Hb_000359_300 Hb_000359_300 Hb_000162_270--Hb_000359_300 Hb_001377_430 Hb_001377_430 Hb_007403_070--Hb_001377_430 Hb_006405_030 Hb_006405_030 Hb_007403_070--Hb_006405_030 Hb_007403_070--Hb_001621_120 Hb_000100_060 Hb_000100_060 Hb_007403_070--Hb_000100_060 Hb_007403_070--Hb_000359_300 Hb_009803_010 Hb_009803_010 Hb_179286_010--Hb_009803_010 Hb_010367_020 Hb_010367_020 Hb_179286_010--Hb_010367_020 Hb_000025_220 Hb_000025_220 Hb_179286_010--Hb_000025_220 Hb_122741_010 Hb_122741_010 Hb_179286_010--Hb_122741_010 Hb_002016_030 Hb_002016_030 Hb_179286_010--Hb_002016_030 Hb_002641_170 Hb_002641_170 Hb_004218_100--Hb_002641_170 Hb_001396_270 Hb_001396_270 Hb_004218_100--Hb_001396_270 Hb_000367_110 Hb_000367_110 Hb_004218_100--Hb_000367_110 Hb_005914_220 Hb_005914_220 Hb_004218_100--Hb_005914_220 Hb_002309_030 Hb_002309_030 Hb_004218_100--Hb_002309_030 Hb_006012_030 Hb_006012_030 Hb_004218_100--Hb_006012_030 Hb_001621_120--Hb_000100_060 Hb_003893_060 Hb_003893_060 Hb_001621_120--Hb_003893_060 Hb_001621_120--Hb_001377_430 Hb_003376_370 Hb_003376_370 Hb_001621_120--Hb_003376_370 Hb_000977_200 Hb_000977_200 Hb_001621_120--Hb_000977_200 Hb_000816_190 Hb_000816_190 Hb_001621_120--Hb_000816_190 Hb_006816_240 Hb_006816_240 Hb_005843_020--Hb_006816_240 Hb_004690_020 Hb_004690_020 Hb_005843_020--Hb_004690_020 Hb_009662_040 Hb_009662_040 Hb_005843_020--Hb_009662_040 Hb_005116_090 Hb_005116_090 Hb_005843_020--Hb_005116_090 Hb_005843_020--Hb_003893_060 Hb_000635_020 Hb_000635_020 Hb_005843_020--Hb_000635_020 Hb_001367_010 Hb_001367_010 Hb_000359_300--Hb_001367_010 Hb_000979_010 Hb_000979_010 Hb_000359_300--Hb_000979_010 Hb_010883_140 Hb_010883_140 Hb_000359_300--Hb_010883_140 Hb_002570_010 Hb_002570_010 Hb_000359_300--Hb_002570_010 Hb_000139_110 Hb_000139_110 Hb_000359_300--Hb_000139_110 Hb_054541_010 Hb_054541_010 Hb_000359_300--Hb_054541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140943 0 0.0541932 0.222441 0.0141227 0.040727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0321164 0 0 0 0

CAGE analysis