Hb_000023_050

Information

Type -
Description -
Location Contig23: 110944-114168
Sequence    

Annotation

kegg
ID rcu:RCOM_0654820
description transcription factor, putative
nr
ID XP_012068940.1
description PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
swissprot
ID F4I7L1
description Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2
trembl
ID A0A067KX39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23931: 111053-114072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_050 0.0 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
2 Hb_000395_010 0.1759621062 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
3 Hb_001269_070 0.1781007674 - - double-stranded RNA binding protein, putative [Ricinus communis]
4 Hb_000210_080 0.1897155036 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
5 Hb_178968_080 0.1910890756 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
6 Hb_000230_170 0.1913555899 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
7 Hb_001373_130 0.1929452499 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000594_100 0.1942138764 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
9 Hb_004357_060 0.1952887495 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
10 Hb_000054_030 0.1990694272 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
11 Hb_002170_080 0.2026939001 - - phosphate transporter [Manihot esculenta]
12 Hb_134813_010 0.2029397633 - - aldo/keto reductase, putative [Ricinus communis]
13 Hb_003935_080 0.2040694512 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
14 Hb_000032_140 0.2051558442 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000130_200 0.2053545048 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
16 Hb_004162_270 0.2063799392 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001294_030 0.2085092331 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
18 Hb_019613_010 0.2105435519 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_005154_080 0.215838761 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640764 [Jatropha curcas]
20 Hb_000070_110 0.2170582883 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_050 Hb_000023_050 Hb_000395_010 Hb_000395_010 Hb_000023_050--Hb_000395_010 Hb_001269_070 Hb_001269_070 Hb_000023_050--Hb_001269_070 Hb_000210_080 Hb_000210_080 Hb_000023_050--Hb_000210_080 Hb_178968_080 Hb_178968_080 Hb_000023_050--Hb_178968_080 Hb_000230_170 Hb_000230_170 Hb_000023_050--Hb_000230_170 Hb_001373_130 Hb_001373_130 Hb_000023_050--Hb_001373_130 Hb_000395_010--Hb_000210_080 Hb_000684_200 Hb_000684_200 Hb_000395_010--Hb_000684_200 Hb_004837_100 Hb_004837_100 Hb_000395_010--Hb_004837_100 Hb_004162_270 Hb_004162_270 Hb_000395_010--Hb_004162_270 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_158092_100 Hb_158092_100 Hb_000395_010--Hb_158092_100 Hb_008179_010 Hb_008179_010 Hb_001269_070--Hb_008179_010 Hb_003935_080 Hb_003935_080 Hb_001269_070--Hb_003935_080 Hb_000032_140 Hb_000032_140 Hb_001269_070--Hb_000032_140 Hb_001269_070--Hb_000395_010 Hb_003226_200 Hb_003226_200 Hb_001269_070--Hb_003226_200 Hb_002486_020 Hb_002486_020 Hb_001269_070--Hb_002486_020 Hb_000210_080--Hb_158092_100 Hb_002529_090 Hb_002529_090 Hb_000210_080--Hb_002529_090 Hb_000388_060 Hb_000388_060 Hb_000210_080--Hb_000388_060 Hb_003680_090 Hb_003680_090 Hb_000210_080--Hb_003680_090 Hb_004348_040 Hb_004348_040 Hb_000210_080--Hb_004348_040 Hb_000130_200 Hb_000130_200 Hb_178968_080--Hb_000130_200 Hb_000032_600 Hb_000032_600 Hb_178968_080--Hb_000032_600 Hb_000070_110 Hb_000070_110 Hb_178968_080--Hb_000070_110 Hb_001040_150 Hb_001040_150 Hb_178968_080--Hb_001040_150 Hb_000622_060 Hb_000622_060 Hb_178968_080--Hb_000622_060 Hb_001054_060 Hb_001054_060 Hb_178968_080--Hb_001054_060 Hb_000230_170--Hb_001054_060 Hb_182424_020 Hb_182424_020 Hb_000230_170--Hb_182424_020 Hb_000054_030 Hb_000054_030 Hb_000230_170--Hb_000054_030 Hb_000230_170--Hb_178968_080 Hb_012132_020 Hb_012132_020 Hb_000230_170--Hb_012132_020 Hb_006775_110 Hb_006775_110 Hb_000230_170--Hb_006775_110 Hb_000594_100 Hb_000594_100 Hb_001373_130--Hb_000594_100 Hb_000983_070 Hb_000983_070 Hb_001373_130--Hb_000983_070 Hb_010128_020 Hb_010128_020 Hb_001373_130--Hb_010128_020 Hb_001373_130--Hb_002529_090 Hb_005489_090 Hb_005489_090 Hb_001373_130--Hb_005489_090 Hb_001373_130--Hb_003935_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224924 0.259175 2.66936 2.13159 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02087 1.92452 0.255663 2.3423 7.2972

CAGE analysis