Hb_162280_010

Information

Type -
Description -
Location Contig162280: 119-1206
Sequence    

Annotation

kegg
ID tcc:TCM_025286
description Phosphoprotein phosphatase isoform 1
nr
ID XP_007029424.1
description Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EYP1
description Phosphoprotein phosphatase isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_025286 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162280_010 0.0 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
2 Hb_000107_560 0.1794010261 - - glutamate receptor 3 plant, putative [Ricinus communis]
3 Hb_000649_270 0.1918050947 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
4 Hb_001608_020 0.1968225094 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000631_140 0.2084285578 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
6 Hb_048643_010 0.2191913546 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_113203_010 0.2192206196 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_000679_210 0.2200035746 - - grr1, plant, putative [Ricinus communis]
9 Hb_065500_010 0.2216366133 - - -
10 Hb_036568_010 0.2233158215 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
11 Hb_005307_040 0.2258751105 - - gulonolactone oxidase, putative [Ricinus communis]
12 Hb_004875_010 0.2296418014 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
13 Hb_010398_010 0.2311468063 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
14 Hb_001446_060 0.2340918618 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_023765_010 0.236721578 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_005217_040 0.2417540866 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
17 Hb_134279_010 0.241864849 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
18 Hb_000120_970 0.2423864278 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
19 Hb_001079_070 0.2438425799 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
20 Hb_086336_010 0.2456900663 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_162280_010 Hb_162280_010 Hb_000107_560 Hb_000107_560 Hb_162280_010--Hb_000107_560 Hb_000649_270 Hb_000649_270 Hb_162280_010--Hb_000649_270 Hb_001608_020 Hb_001608_020 Hb_162280_010--Hb_001608_020 Hb_000631_140 Hb_000631_140 Hb_162280_010--Hb_000631_140 Hb_048643_010 Hb_048643_010 Hb_162280_010--Hb_048643_010 Hb_113203_010 Hb_113203_010 Hb_162280_010--Hb_113203_010 Hb_080451_010 Hb_080451_010 Hb_000107_560--Hb_080451_010 Hb_089100_040 Hb_089100_040 Hb_000107_560--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000107_560--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_000107_560--Hb_065500_030 Hb_009897_010 Hb_009897_010 Hb_000107_560--Hb_009897_010 Hb_000120_970 Hb_000120_970 Hb_000107_560--Hb_000120_970 Hb_004875_010 Hb_004875_010 Hb_000649_270--Hb_004875_010 Hb_001103_090 Hb_001103_090 Hb_000649_270--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_000649_270--Hb_001675_320 Hb_000260_780 Hb_000260_780 Hb_000649_270--Hb_000260_780 Hb_150346_010 Hb_150346_010 Hb_000649_270--Hb_150346_010 Hb_023765_010 Hb_023765_010 Hb_000649_270--Hb_023765_010 Hb_010398_010 Hb_010398_010 Hb_001608_020--Hb_010398_010 Hb_000362_090 Hb_000362_090 Hb_001608_020--Hb_000362_090 Hb_004800_240 Hb_004800_240 Hb_001608_020--Hb_004800_240 Hb_048848_010 Hb_048848_010 Hb_001608_020--Hb_048848_010 Hb_004126_080 Hb_004126_080 Hb_001608_020--Hb_004126_080 Hb_009193_110 Hb_009193_110 Hb_001608_020--Hb_009193_110 Hb_000015_160 Hb_000015_160 Hb_000631_140--Hb_000015_160 Hb_012753_040 Hb_012753_040 Hb_000631_140--Hb_012753_040 Hb_002804_030 Hb_002804_030 Hb_000631_140--Hb_002804_030 Hb_010921_020 Hb_010921_020 Hb_000631_140--Hb_010921_020 Hb_000991_050 Hb_000991_050 Hb_000631_140--Hb_000991_050 Hb_000302_300 Hb_000302_300 Hb_000631_140--Hb_000302_300 Hb_000152_460 Hb_000152_460 Hb_048643_010--Hb_000152_460 Hb_004531_110 Hb_004531_110 Hb_048643_010--Hb_004531_110 Hb_000818_080 Hb_000818_080 Hb_048643_010--Hb_000818_080 Hb_000000_110 Hb_000000_110 Hb_048643_010--Hb_000000_110 Hb_002928_120 Hb_002928_120 Hb_048643_010--Hb_002928_120 Hb_000025_400 Hb_000025_400 Hb_048643_010--Hb_000025_400 Hb_134279_010 Hb_134279_010 Hb_113203_010--Hb_134279_010 Hb_000233_100 Hb_000233_100 Hb_113203_010--Hb_000233_100 Hb_113203_010--Hb_000107_560 Hb_000105_030 Hb_000105_030 Hb_113203_010--Hb_000105_030 Hb_000679_210 Hb_000679_210 Hb_113203_010--Hb_000679_210 Hb_000105_020 Hb_000105_020 Hb_113203_010--Hb_000105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.54629 16.8205 1.11694 13.879 11.4627 2.47023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.384936 0.259484 2.13963 9.09358 8.7161

CAGE analysis