Hb_079513_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig79513: 6274-8530
Sequence    

Annotation

kegg
ID cic:CICLE_v10004284mg
description hypothetical protein
nr
ID XP_012086131.1
description PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079513_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
2 Hb_004545_010 0.2247873691 - - acyl carrier protein [Ricinus communis]
3 Hb_000032_140 0.2376777501 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002150_130 0.2377878905 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
5 Hb_002311_300 0.2477152919 - - PREDICTED: J protein JJJ2 [Jatropha curcas]
6 Hb_005690_030 0.2531432357 - - hypothetical protein VITISV_020378 [Vitis vinifera]
7 Hb_006620_070 0.2546823573 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
8 Hb_000176_010 0.255192722 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
9 Hb_000175_190 0.2555028969 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
10 Hb_002272_220 0.2577355876 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002374_300 0.2581673753 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
12 Hb_002182_020 0.2583524338 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_010638_010 0.2590083092 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
14 Hb_153269_010 0.2591901347 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
15 Hb_012545_040 0.2594603843 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_005914_050 0.259815437 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
17 Hb_000042_290 0.262692729 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
18 Hb_000000_180 0.2630718569 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_000206_170 0.2644470197 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
20 Hb_001405_090 0.2645615918 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_079513_010 Hb_079513_010 Hb_004545_010 Hb_004545_010 Hb_079513_010--Hb_004545_010 Hb_000032_140 Hb_000032_140 Hb_079513_010--Hb_000032_140 Hb_002150_130 Hb_002150_130 Hb_079513_010--Hb_002150_130 Hb_002311_300 Hb_002311_300 Hb_079513_010--Hb_002311_300 Hb_005690_030 Hb_005690_030 Hb_079513_010--Hb_005690_030 Hb_006620_070 Hb_006620_070 Hb_079513_010--Hb_006620_070 Hb_001405_090 Hb_001405_090 Hb_004545_010--Hb_001405_090 Hb_004545_010--Hb_000032_140 Hb_000206_170 Hb_000206_170 Hb_004545_010--Hb_000206_170 Hb_004545_010--Hb_006620_070 Hb_000042_290 Hb_000042_290 Hb_004545_010--Hb_000042_290 Hb_019613_010 Hb_019613_010 Hb_004545_010--Hb_019613_010 Hb_007904_040 Hb_007904_040 Hb_000032_140--Hb_007904_040 Hb_000032_140--Hb_000042_290 Hb_000175_050 Hb_000175_050 Hb_000032_140--Hb_000175_050 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_001842_020 Hb_001842_020 Hb_000032_140--Hb_001842_020 Hb_001124_180 Hb_001124_180 Hb_000032_140--Hb_001124_180 Hb_002150_130--Hb_000042_290 Hb_005914_050 Hb_005914_050 Hb_002150_130--Hb_005914_050 Hb_000176_010 Hb_000176_010 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_002411_060 Hb_002411_060 Hb_002311_300--Hb_002411_060 Hb_003929_100 Hb_003929_100 Hb_002311_300--Hb_003929_100 Hb_000740_040 Hb_000740_040 Hb_002311_300--Hb_000740_040 Hb_000005_110 Hb_000005_110 Hb_002311_300--Hb_000005_110 Hb_002311_300--Hb_005690_030 Hb_003362_080 Hb_003362_080 Hb_002311_300--Hb_003362_080 Hb_002045_090 Hb_002045_090 Hb_005690_030--Hb_002045_090 Hb_000123_370 Hb_000123_370 Hb_005690_030--Hb_000123_370 Hb_086122_010 Hb_086122_010 Hb_005690_030--Hb_086122_010 Hb_001793_020 Hb_001793_020 Hb_005690_030--Hb_001793_020 Hb_000000_180 Hb_000000_180 Hb_005690_030--Hb_000000_180 Hb_006130_020 Hb_006130_020 Hb_005690_030--Hb_006130_020 Hb_004459_060 Hb_004459_060 Hb_006620_070--Hb_004459_060 Hb_006620_070--Hb_001405_090 Hb_007694_060 Hb_007694_060 Hb_006620_070--Hb_007694_060 Hb_000005_130 Hb_000005_130 Hb_006620_070--Hb_000005_130 Hb_002411_100 Hb_002411_100 Hb_006620_070--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_006620_070--Hb_000442_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.157646 0.107068 0 0.0121606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0631855 0.0994188 0 0.0198448 0.155926

CAGE analysis