Hb_044653_030

Information

Type -
Description -
Location Contig44653: 35469-39852
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43058: 35797-36108 , PASA_asmbl_43061: 37502-37763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044653_030 0.0 - - -
2 Hb_000022_050 0.1274128531 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
3 Hb_000261_230 0.1346501547 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
4 Hb_000034_080 0.1349959646 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
5 Hb_000120_170 0.1360052562 - - selenoprotein [Populus trichocarpa]
6 Hb_004586_300 0.1367941158 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_000096_120 0.1396507418 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
8 Hb_010810_010 0.1400367606 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
9 Hb_000062_270 0.1413487477 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
10 Hb_010485_020 0.1423360023 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
11 Hb_000139_530 0.1433629411 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005797_010 0.1443229067 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
13 Hb_002739_020 0.1471579168 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
14 Hb_002311_380 0.147171666 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
15 Hb_000258_110 0.1474412021 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
16 Hb_001227_130 0.1495049784 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
17 Hb_001482_050 0.1496552366 - - COR413-PM2, putative [Ricinus communis]
18 Hb_003038_120 0.1522444392 - - rer1 protein, putative [Ricinus communis]
19 Hb_001931_030 0.1524994361 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
20 Hb_000115_080 0.1526228091 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]

Gene co-expression network

sample Hb_044653_030 Hb_044653_030 Hb_000022_050 Hb_000022_050 Hb_044653_030--Hb_000022_050 Hb_000261_230 Hb_000261_230 Hb_044653_030--Hb_000261_230 Hb_000034_080 Hb_000034_080 Hb_044653_030--Hb_000034_080 Hb_000120_170 Hb_000120_170 Hb_044653_030--Hb_000120_170 Hb_004586_300 Hb_004586_300 Hb_044653_030--Hb_004586_300 Hb_000096_120 Hb_000096_120 Hb_044653_030--Hb_000096_120 Hb_000022_050--Hb_000261_230 Hb_005797_010 Hb_005797_010 Hb_000022_050--Hb_005797_010 Hb_000009_400 Hb_000009_400 Hb_000022_050--Hb_000009_400 Hb_012322_020 Hb_012322_020 Hb_000022_050--Hb_012322_020 Hb_001829_040 Hb_001829_040 Hb_000022_050--Hb_001829_040 Hb_003929_170 Hb_003929_170 Hb_000022_050--Hb_003929_170 Hb_003897_040 Hb_003897_040 Hb_000261_230--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000261_230--Hb_032990_010 Hb_005460_050 Hb_005460_050 Hb_000261_230--Hb_005460_050 Hb_000261_230--Hb_005797_010 Hb_002739_020 Hb_002739_020 Hb_000261_230--Hb_002739_020 Hb_003038_120 Hb_003038_120 Hb_000034_080--Hb_003038_120 Hb_000034_080--Hb_003897_040 Hb_000034_080--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_000034_080--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_000034_080--Hb_007062_040 Hb_007413_040 Hb_007413_040 Hb_000034_080--Hb_007413_040 Hb_003549_150 Hb_003549_150 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000076_160 Hb_000076_160 Hb_000120_170--Hb_000076_160 Hb_000227_090 Hb_000227_090 Hb_000120_170--Hb_000227_090 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000120_170--Hb_000009_400 Hb_006059_040 Hb_006059_040 Hb_004586_300--Hb_006059_040 Hb_002232_410 Hb_002232_410 Hb_004586_300--Hb_002232_410 Hb_000069_380 Hb_000069_380 Hb_004586_300--Hb_000069_380 Hb_002445_060 Hb_002445_060 Hb_004586_300--Hb_002445_060 Hb_001221_110 Hb_001221_110 Hb_004586_300--Hb_001221_110 Hb_004586_300--Hb_000120_170 Hb_000879_180 Hb_000879_180 Hb_000096_120--Hb_000879_180 Hb_004096_180 Hb_004096_180 Hb_000096_120--Hb_004096_180 Hb_006588_070 Hb_006588_070 Hb_000096_120--Hb_006588_070 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000046_570 Hb_000046_570 Hb_000096_120--Hb_000046_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203172 0.470667 0.691955 0.734877 0.482512 0.402582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.725852 0.228075 0.191249 0.38105 0.210865

CAGE analysis