Hb_041813_090

Information

Type -
Description -
Location Contig41813: 41559-43286
Sequence    

Annotation

kegg
ID atr:s05400p00003230
description AMTR_s05400p00003230; hypothetical protein
nr
ID KCW51607.1
description hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]
swissprot
ID P92543
description Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1
trembl
ID A0A059ABZ6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01097 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_090 0.0 - - hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]
2 Hb_032264_050 0.1512025315 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
3 Hb_004117_320 0.1567922798 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
4 Hb_002030_050 0.1662106386 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
5 Hb_169948_010 0.1743541242 - - hypothetical protein VITISV_006524 [Vitis vinifera]
6 Hb_013420_060 0.1771798502 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
7 Hb_010402_040 0.1778188144 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
8 Hb_005867_050 0.1778968494 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
9 Hb_005779_090 0.1864014891 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
10 Hb_000951_070 0.1901217824 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
11 Hb_022693_080 0.1947463449 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
12 Hb_000061_440 0.195084887 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_000215_230 0.1980825112 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
14 Hb_003440_080 0.2030280876 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_004291_050 0.2050727121 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
16 Hb_114271_010 0.2053149156 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
17 Hb_000084_140 0.2053722727 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
18 Hb_002226_090 0.2069780655 - - Stachyose synthase precursor, putative [Ricinus communis]
19 Hb_057880_020 0.2080962485 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
20 Hb_000352_060 0.2088401573 - - RNA-directed DNA polymerase [Arachis hypogaea]

Gene co-expression network

sample Hb_041813_090 Hb_041813_090 Hb_032264_050 Hb_032264_050 Hb_041813_090--Hb_032264_050 Hb_004117_320 Hb_004117_320 Hb_041813_090--Hb_004117_320 Hb_002030_050 Hb_002030_050 Hb_041813_090--Hb_002030_050 Hb_169948_010 Hb_169948_010 Hb_041813_090--Hb_169948_010 Hb_013420_060 Hb_013420_060 Hb_041813_090--Hb_013420_060 Hb_010402_040 Hb_010402_040 Hb_041813_090--Hb_010402_040 Hb_032264_050--Hb_004117_320 Hb_024066_040 Hb_024066_040 Hb_032264_050--Hb_024066_040 Hb_000061_440 Hb_000061_440 Hb_032264_050--Hb_000061_440 Hb_008165_050 Hb_008165_050 Hb_032264_050--Hb_008165_050 Hb_004837_120 Hb_004837_120 Hb_032264_050--Hb_004837_120 Hb_004117_320--Hb_010402_040 Hb_005867_050 Hb_005867_050 Hb_004117_320--Hb_005867_050 Hb_002226_090 Hb_002226_090 Hb_004117_320--Hb_002226_090 Hb_022693_080 Hb_022693_080 Hb_004117_320--Hb_022693_080 Hb_004979_080 Hb_004979_080 Hb_004117_320--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_004117_320--Hb_004291_050 Hb_004242_120 Hb_004242_120 Hb_002030_050--Hb_004242_120 Hb_000574_320 Hb_000574_320 Hb_002030_050--Hb_000574_320 Hb_011472_050 Hb_011472_050 Hb_002030_050--Hb_011472_050 Hb_000237_170 Hb_000237_170 Hb_002030_050--Hb_000237_170 Hb_003687_160 Hb_003687_160 Hb_002030_050--Hb_003687_160 Hb_002013_030 Hb_002013_030 Hb_002030_050--Hb_002013_030 Hb_066293_010 Hb_066293_010 Hb_169948_010--Hb_066293_010 Hb_125961_010 Hb_125961_010 Hb_169948_010--Hb_125961_010 Hb_004934_130 Hb_004934_130 Hb_169948_010--Hb_004934_130 Hb_057880_020 Hb_057880_020 Hb_169948_010--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_169948_010--Hb_000462_160 Hb_027337_130 Hb_027337_130 Hb_169948_010--Hb_027337_130 Hb_000574_330 Hb_000574_330 Hb_013420_060--Hb_000574_330 Hb_004712_200 Hb_004712_200 Hb_013420_060--Hb_004712_200 Hb_003333_040 Hb_003333_040 Hb_013420_060--Hb_003333_040 Hb_032733_020 Hb_032733_020 Hb_013420_060--Hb_032733_020 Hb_011900_020 Hb_011900_020 Hb_013420_060--Hb_011900_020 Hb_000029_380 Hb_000029_380 Hb_013420_060--Hb_000029_380 Hb_010402_040--Hb_002226_090 Hb_000951_070 Hb_000951_070 Hb_010402_040--Hb_000951_070 Hb_010402_040--Hb_005867_050 Hb_020367_040 Hb_020367_040 Hb_010402_040--Hb_020367_040 Hb_000668_180 Hb_000668_180 Hb_010402_040--Hb_000668_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0540826 0.172259 0.104032 0.140442 0.0271475 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0197337 0.690622

CAGE analysis