Hb_028341_010

Information

Type -
Description -
Location Contig28341: 92-376
Sequence    

Annotation

kegg
ID cic:CICLE_v10026841mg
description hypothetical protein
nr
ID XP_006426971.1
description hypothetical protein CICLE_v10026841mg [Citrus clementina]
swissprot
ID Q43292
description 60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2
trembl
ID A0A067F063
description Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028341_010 0.0 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
2 Hb_001247_280 0.168163048 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
3 Hb_001373_110 0.1710681399 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
4 Hb_000976_260 0.1857688119 - - -
5 Hb_003106_080 0.1877519928 - - cell division cycle, putative [Ricinus communis]
6 Hb_005511_100 0.1917738484 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
7 Hb_000175_090 0.1960191672 - - conserved hypothetical protein [Ricinus communis]
8 Hb_140833_010 0.1977824132 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
9 Hb_002530_010 0.2007791374 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
10 Hb_012114_060 0.2018375645 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
11 Hb_000548_050 0.2020735137 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
12 Hb_092337_020 0.2024893417 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
13 Hb_000261_250 0.2040205488 - - elongation factor 1-alpha [Lepidium sativum]
14 Hb_000497_040 0.2044579183 - - BnaC09g09960D [Brassica napus]
15 Hb_001142_050 0.2047672104 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
16 Hb_002119_080 0.2053324202 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
17 Hb_005085_020 0.2060664814 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
18 Hb_000081_010 0.2062678257 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
19 Hb_003927_120 0.2063449254 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
20 Hb_001902_130 0.208197093 - - 60S ribosomal protein L36-2 [Morus notabilis]

Gene co-expression network

sample Hb_028341_010 Hb_028341_010 Hb_001247_280 Hb_001247_280 Hb_028341_010--Hb_001247_280 Hb_001373_110 Hb_001373_110 Hb_028341_010--Hb_001373_110 Hb_000976_260 Hb_000976_260 Hb_028341_010--Hb_000976_260 Hb_003106_080 Hb_003106_080 Hb_028341_010--Hb_003106_080 Hb_005511_100 Hb_005511_100 Hb_028341_010--Hb_005511_100 Hb_000175_090 Hb_000175_090 Hb_028341_010--Hb_000175_090 Hb_001142_050 Hb_001142_050 Hb_001247_280--Hb_001142_050 Hb_032278_020 Hb_032278_020 Hb_001247_280--Hb_032278_020 Hb_000261_250 Hb_000261_250 Hb_001247_280--Hb_000261_250 Hb_001430_120 Hb_001430_120 Hb_001247_280--Hb_001430_120 Hb_000803_110 Hb_000803_110 Hb_001247_280--Hb_000803_110 Hb_009222_010 Hb_009222_010 Hb_001247_280--Hb_009222_010 Hb_140833_010 Hb_140833_010 Hb_001373_110--Hb_140833_010 Hb_011013_010 Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_001373_110--Hb_000661_140 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_002450_040 Hb_002450_040 Hb_001373_110--Hb_002450_040 Hb_000976_260--Hb_001142_050 Hb_000976_260--Hb_000012_020 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000976_260--Hb_000261_250 Hb_000976_260--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_000976_260--Hb_002639_150 Hb_002119_080 Hb_002119_080 Hb_003106_080--Hb_002119_080 Hb_000661_040 Hb_000661_040 Hb_003106_080--Hb_000661_040 Hb_001089_110 Hb_001089_110 Hb_003106_080--Hb_001089_110 Hb_005754_010 Hb_005754_010 Hb_003106_080--Hb_005754_010 Hb_000497_040 Hb_000497_040 Hb_003106_080--Hb_000497_040 Hb_000039_220 Hb_000039_220 Hb_003106_080--Hb_000039_220 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_000175_090--Hb_004363_010 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000175_090--Hb_000261_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1955.51 1839.3 4331.57 904.06 883.061 5019.49
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1143.83 2940.7 754.814 846.883 298.685

CAGE analysis