Hb_001247_280

Information

Type -
Description -
Location Contig1247: 193059-195166
Sequence    

Annotation

kegg
ID rcu:RCOM_1436660
description hypothetical protein
nr
ID XP_012069741.1
description PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067DQJ3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034386mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s23-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07500: 192955-196755 , PASA_asmbl_07501: 192955-195638 , PASA_asmbl_07502: 192955-194506
cDNA
(Sanger)
(ID:Location)		 005_O17.ab1: 193070-195636

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_280 0.0 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
2 Hb_001142_050 0.1170266364 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
3 Hb_032278_020 0.1211261282 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
4 Hb_000261_250 0.1243333103 - - elongation factor 1-alpha [Lepidium sativum]
5 Hb_001430_120 0.1272937381 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
6 Hb_000803_110 0.1273561833 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
7 Hb_009222_010 0.1284911012 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000785_030 0.1313563287 - - hypothetical protein RCOM_0808030 [Ricinus communis]
9 Hb_011848_010 0.1335770284 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
10 Hb_000107_190 0.134505858 - - 50S ribosomal protein L20 [Hevea brasiliensis]
11 Hb_000548_050 0.1355068717 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
12 Hb_001377_070 0.1357281561 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002043_090 0.1375465854 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_142439_010 0.1376094548 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
15 Hb_000189_340 0.1377038555 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
16 Hb_003299_030 0.137840658 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
17 Hb_002192_080 0.138150732 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
18 Hb_003125_070 0.1382678336 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
19 Hb_011386_040 0.1390632486 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
20 Hb_002530_010 0.1399547801 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001247_280 Hb_001247_280 Hb_001142_050 Hb_001142_050 Hb_001247_280--Hb_001142_050 Hb_032278_020 Hb_032278_020 Hb_001247_280--Hb_032278_020 Hb_000261_250 Hb_000261_250 Hb_001247_280--Hb_000261_250 Hb_001430_120 Hb_001430_120 Hb_001247_280--Hb_001430_120 Hb_000803_110 Hb_000803_110 Hb_001247_280--Hb_000803_110 Hb_009222_010 Hb_009222_010 Hb_001247_280--Hb_009222_010 Hb_000012_020 Hb_000012_020 Hb_001142_050--Hb_000012_020 Hb_000976_260 Hb_000976_260 Hb_001142_050--Hb_000976_260 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_001142_050--Hb_000261_250 Hb_001142_050--Hb_009222_010 Hb_003467_010 Hb_003467_010 Hb_001142_050--Hb_003467_010 Hb_000059_140 Hb_000059_140 Hb_032278_020--Hb_000059_140 Hb_000648_100 Hb_000648_100 Hb_032278_020--Hb_000648_100 Hb_000923_080 Hb_000923_080 Hb_032278_020--Hb_000923_080 Hb_011930_080 Hb_011930_080 Hb_032278_020--Hb_011930_080 Hb_001102_080 Hb_001102_080 Hb_032278_020--Hb_001102_080 Hb_004209_020 Hb_004209_020 Hb_032278_020--Hb_004209_020 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_142439_010 Hb_142439_010 Hb_001430_120--Hb_142439_010 Hb_001358_030 Hb_001358_030 Hb_001430_120--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_001430_120--Hb_000189_340 Hb_005260_020 Hb_005260_020 Hb_001430_120--Hb_005260_020 Hb_002296_050 Hb_002296_050 Hb_001430_120--Hb_002296_050 Hb_004310_150 Hb_004310_150 Hb_001430_120--Hb_004310_150 Hb_000803_110--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000803_110--Hb_003091_010 Hb_000976_320 Hb_000976_320 Hb_000803_110--Hb_000976_320 Hb_000803_110--Hb_000394_190 Hb_012799_110 Hb_012799_110 Hb_000803_110--Hb_012799_110 Hb_000072_140 Hb_000072_140 Hb_000803_110--Hb_000072_140 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_009222_010--Hb_011848_010 Hb_009222_010--Hb_000189_340 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_009222_010--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.53881 7.59408 10.5678 3.83138 10.0052 16.3571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99092 8.36307 2.58041 5.40004 1.65696

CAGE analysis