Hb_017966_020

Information

Type -
Description -
Location Contig17966: 16122-18149
Sequence    

Annotation

kegg
ID rcu:RCOM_0132030
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088333.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
swissprot
ID Q9LR67
description Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1
trembl
ID A0A067JW13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25827 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17355: 14290-18047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017966_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
2 Hb_000331_560 0.0860208523 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
3 Hb_006882_020 0.0899670148 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006909_070 0.0901052219 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000780_190 0.0905581376 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
6 Hb_001109_060 0.0913781212 - - amino acid transporter, putative [Ricinus communis]
7 Hb_003884_030 0.0927514609 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
8 Hb_007943_110 0.0950214065 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
9 Hb_004701_050 0.0950526666 - - alpha1 family protein [Populus trichocarpa]
10 Hb_133702_020 0.0965982158 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_012760_100 0.0971821632 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
12 Hb_089140_050 0.0981673647 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
13 Hb_000429_220 0.0983020391 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
14 Hb_004182_050 0.1029017753 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
15 Hb_015978_100 0.1033598032 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
16 Hb_000281_090 0.1046495971 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
17 Hb_009193_120 0.1052849311 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_004453_110 0.1062923039 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_003203_030 0.1068543048 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
20 Hb_000183_050 0.1070008093 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_017966_020 Hb_017966_020 Hb_000331_560 Hb_000331_560 Hb_017966_020--Hb_000331_560 Hb_006882_020 Hb_006882_020 Hb_017966_020--Hb_006882_020 Hb_006909_070 Hb_006909_070 Hb_017966_020--Hb_006909_070 Hb_000780_190 Hb_000780_190 Hb_017966_020--Hb_000780_190 Hb_001109_060 Hb_001109_060 Hb_017966_020--Hb_001109_060 Hb_003884_030 Hb_003884_030 Hb_017966_020--Hb_003884_030 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_003203_030 Hb_003203_030 Hb_000331_560--Hb_003203_030 Hb_018118_010 Hb_018118_010 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_003371_110 Hb_003371_110 Hb_006882_020--Hb_003371_110 Hb_004453_110 Hb_004453_110 Hb_006882_020--Hb_004453_110 Hb_007943_110 Hb_007943_110 Hb_006882_020--Hb_007943_110 Hb_008112_030 Hb_008112_030 Hb_006882_020--Hb_008112_030 Hb_000429_220 Hb_000429_220 Hb_006882_020--Hb_000429_220 Hb_003029_110 Hb_003029_110 Hb_006882_020--Hb_003029_110 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_006909_070--Hb_007943_110 Hb_007919_100 Hb_007919_100 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130 Hb_000261_100 Hb_000261_100 Hb_000780_190--Hb_000261_100 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_041828_010 Hb_041828_010 Hb_000780_190--Hb_041828_010 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000004_030 Hb_000004_030 Hb_000780_190--Hb_000004_030 Hb_004701_050 Hb_004701_050 Hb_000780_190--Hb_004701_050 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_005227_010 Hb_005227_010 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_027380_140 Hb_027380_140 Hb_003884_030--Hb_027380_140 Hb_000035_410 Hb_000035_410 Hb_003884_030--Hb_000035_410 Hb_089140_050 Hb_089140_050 Hb_003884_030--Hb_089140_050 Hb_004108_100 Hb_004108_100 Hb_003884_030--Hb_004108_100 Hb_003656_180 Hb_003656_180 Hb_003884_030--Hb_003656_180 Hb_003884_030--Hb_000429_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.27155 12.5411 5.01885 9.81413 11.0021 13.8849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13356 6.17255 4.843 6.41322 15.3422

CAGE analysis