Hb_012098_050

Information

Type -
Description -
Location Contig12098: 28532-50435
Sequence    

Annotation

kegg
ID mtr:MTR_4g018970
description Receptor-like protein kinase
nr
ID XP_009618938.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID G7JR90
description Leucine-rich receptor-like kinase family protein OS=Medicago truncatula GN=MTR_4g018970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06453: 46755-47238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
2 Hb_004770_040 0.2727253261 - - PREDICTED: serine carboxypeptidase-like 31 [Eucalyptus grandis]
3 Hb_153395_010 0.2734937636 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_011639_040 0.2957578365 - - hypothetical protein M569_08265, partial [Genlisea aurea]
5 Hb_002863_080 0.3056688218 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
6 Hb_033555_010 0.3074826765 - - -
7 Hb_004254_110 0.318475415 - - -
8 Hb_005273_040 0.3230266378 - - -
9 Hb_000513_070 0.324863936 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
10 Hb_002477_220 0.3307261709 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
11 Hb_000139_150 0.3354412785 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
12 Hb_175841_010 0.3377277081 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_000406_060 0.3395910038 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
14 Hb_007101_220 0.3413231662 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
15 Hb_098315_090 0.3428688347 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
16 Hb_004657_030 0.3432873799 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
17 Hb_000022_170 0.3441644006 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
18 Hb_000236_450 0.3444641573 - - coated vesicle membrane protein, putative [Ricinus communis]
19 Hb_000735_170 0.3460577206 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
20 Hb_001477_040 0.3476678054 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_012098_050 Hb_012098_050 Hb_004770_040 Hb_004770_040 Hb_012098_050--Hb_004770_040 Hb_153395_010 Hb_153395_010 Hb_012098_050--Hb_153395_010 Hb_011639_040 Hb_011639_040 Hb_012098_050--Hb_011639_040 Hb_002863_080 Hb_002863_080 Hb_012098_050--Hb_002863_080 Hb_033555_010 Hb_033555_010 Hb_012098_050--Hb_033555_010 Hb_004254_110 Hb_004254_110 Hb_012098_050--Hb_004254_110 Hb_006508_030 Hb_006508_030 Hb_004770_040--Hb_006508_030 Hb_012528_030 Hb_012528_030 Hb_004770_040--Hb_012528_030 Hb_000984_250 Hb_000984_250 Hb_004770_040--Hb_000984_250 Hb_176368_010 Hb_176368_010 Hb_004770_040--Hb_176368_010 Hb_000859_050 Hb_000859_050 Hb_004770_040--Hb_000859_050 Hb_004195_060 Hb_004195_060 Hb_004770_040--Hb_004195_060 Hb_003626_080 Hb_003626_080 Hb_153395_010--Hb_003626_080 Hb_052548_010 Hb_052548_010 Hb_153395_010--Hb_052548_010 Hb_003038_150 Hb_003038_150 Hb_153395_010--Hb_003038_150 Hb_153395_010--Hb_002863_080 Hb_113673_010 Hb_113673_010 Hb_153395_010--Hb_113673_010 Hb_000215_160 Hb_000215_160 Hb_011639_040--Hb_000215_160 Hb_002851_080 Hb_002851_080 Hb_011639_040--Hb_002851_080 Hb_000406_060 Hb_000406_060 Hb_011639_040--Hb_000406_060 Hb_001006_340 Hb_001006_340 Hb_011639_040--Hb_001006_340 Hb_098315_090 Hb_098315_090 Hb_011639_040--Hb_098315_090 Hb_183443_010 Hb_183443_010 Hb_011639_040--Hb_183443_010 Hb_006736_010 Hb_006736_010 Hb_002863_080--Hb_006736_010 Hb_000137_060 Hb_000137_060 Hb_002863_080--Hb_000137_060 Hb_000054_110 Hb_000054_110 Hb_002863_080--Hb_000054_110 Hb_046998_010 Hb_046998_010 Hb_002863_080--Hb_046998_010 Hb_003097_050 Hb_003097_050 Hb_002863_080--Hb_003097_050 Hb_007382_070 Hb_007382_070 Hb_002863_080--Hb_007382_070 Hb_000098_200 Hb_000098_200 Hb_033555_010--Hb_000098_200 Hb_169586_010 Hb_169586_010 Hb_033555_010--Hb_169586_010 Hb_007718_020 Hb_007718_020 Hb_033555_010--Hb_007718_020 Hb_002477_040 Hb_002477_040 Hb_033555_010--Hb_002477_040 Hb_000735_170 Hb_000735_170 Hb_033555_010--Hb_000735_170 Hb_004602_020 Hb_004602_020 Hb_033555_010--Hb_004602_020 Hb_000105_020 Hb_000105_020 Hb_004254_110--Hb_000105_020 Hb_001079_070 Hb_001079_070 Hb_004254_110--Hb_001079_070 Hb_143986_010 Hb_143986_010 Hb_004254_110--Hb_143986_010 Hb_008948_160 Hb_008948_160 Hb_004254_110--Hb_008948_160 Hb_005962_010 Hb_005962_010 Hb_004254_110--Hb_005962_010 Hb_146339_010 Hb_146339_010 Hb_004254_110--Hb_146339_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0414933 0.0351808 0.0221331 0.034599 0.245023 0.04001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00470723 0 0 0.308897 0.143957

CAGE analysis