Hb_004254_110

Information

Type -
Description -
Location Contig4254: 100480-100959
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_110 0.0 - - -
2 Hb_000105_020 0.1489087315 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
3 Hb_001079_070 0.1905874558 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
4 Hb_143986_010 0.2100204173 - - PREDICTED: beta-galactosidase [Jatropha curcas]
5 Hb_008948_160 0.2101118491 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
6 Hb_005962_010 0.2102989701 - - -
7 Hb_146339_010 0.2181434015 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
8 Hb_011609_150 0.2191237934 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
9 Hb_176368_010 0.219326108 - - hypothetical protein POPTR_0019s00300g [Populus trichocarpa]
10 Hb_000105_030 0.2214051959 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
11 Hb_006083_060 0.2337795038 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
12 Hb_000513_070 0.2340855632 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
13 Hb_001401_060 0.2346813483 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
14 Hb_120470_010 0.2353119455 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
15 Hb_000327_080 0.235769517 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
16 Hb_000162_020 0.2401648095 - - protein translocase, putative [Ricinus communis]
17 Hb_003211_040 0.2414214922 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
18 Hb_000046_180 0.2415118126 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
19 Hb_012528_030 0.2423168749 - - -
20 Hb_004195_060 0.2428627159 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_004254_110 Hb_004254_110 Hb_000105_020 Hb_000105_020 Hb_004254_110--Hb_000105_020 Hb_001079_070 Hb_001079_070 Hb_004254_110--Hb_001079_070 Hb_143986_010 Hb_143986_010 Hb_004254_110--Hb_143986_010 Hb_008948_160 Hb_008948_160 Hb_004254_110--Hb_008948_160 Hb_005962_010 Hb_005962_010 Hb_004254_110--Hb_005962_010 Hb_146339_010 Hb_146339_010 Hb_004254_110--Hb_146339_010 Hb_000105_020--Hb_008948_160 Hb_000105_020--Hb_143986_010 Hb_000105_030 Hb_000105_030 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_003604_040 Hb_003604_040 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180 Hb_000512_030 Hb_000512_030 Hb_001079_070--Hb_000512_030 Hb_001079_070--Hb_000105_020 Hb_001079_070--Hb_008948_160 Hb_001079_070--Hb_000105_030 Hb_000679_210 Hb_000679_210 Hb_001079_070--Hb_000679_210 Hb_011791_020 Hb_011791_020 Hb_143986_010--Hb_011791_020 Hb_143986_010--Hb_008948_160 Hb_120470_010 Hb_120470_010 Hb_143986_010--Hb_120470_010 Hb_000327_080 Hb_000327_080 Hb_143986_010--Hb_000327_080 Hb_000117_070 Hb_000117_070 Hb_143986_010--Hb_000117_070 Hb_008948_160--Hb_120470_010 Hb_008948_160--Hb_000105_030 Hb_008948_160--Hb_011791_020 Hb_008948_160--Hb_003604_040 Hb_000078_170 Hb_000078_170 Hb_005962_010--Hb_000078_170 Hb_008556_020 Hb_008556_020 Hb_005962_010--Hb_008556_020 Hb_002311_230 Hb_002311_230 Hb_005962_010--Hb_002311_230 Hb_011639_150 Hb_011639_150 Hb_005962_010--Hb_011639_150 Hb_001766_040 Hb_001766_040 Hb_005962_010--Hb_001766_040 Hb_119886_040 Hb_119886_040 Hb_005962_010--Hb_119886_040 Hb_063943_010 Hb_063943_010 Hb_146339_010--Hb_063943_010 Hb_183443_010 Hb_183443_010 Hb_146339_010--Hb_183443_010 Hb_003059_010 Hb_003059_010 Hb_146339_010--Hb_003059_010 Hb_089206_010 Hb_089206_010 Hb_146339_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_146339_010--Hb_003175_110 Hb_000714_040 Hb_000714_040 Hb_146339_010--Hb_000714_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.438476 0.788361 0.206688 0.0845844 1.03152 0.360909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.20444 0.724118 0.675624

CAGE analysis