Hb_011287_080

Information

Type -
Description -
Location Contig11287: 56052-62012
Sequence    

Annotation

kegg
ID rcu:RCOM_1080950
description hypothetical protein
nr
ID XP_002514952.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080950 PE=4 SV=1
Gene Ontology
ID GO:0048765
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03888: 39299-58827 , PASA_asmbl_03893: 59696-60808 , PASA_asmbl_03894: 60931-61609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_118840_030 0.0804024912 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
3 Hb_000556_220 0.0847441618 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
4 Hb_061878_010 0.094619827 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
5 Hb_000680_110 0.0960323152 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_041327_010 0.0965355055 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
7 Hb_003060_060 0.0966935499 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
8 Hb_085781_020 0.0974393954 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
9 Hb_007426_130 0.1006069029 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
10 Hb_000723_220 0.1018685077 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
11 Hb_000037_220 0.1027459393 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
12 Hb_017358_040 0.1031806108 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
13 Hb_000395_070 0.1032640586 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
14 Hb_002909_090 0.103936669 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
15 Hb_001860_040 0.105217371 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
16 Hb_011287_050 0.1059501752 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
17 Hb_001913_060 0.1071381305 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
18 Hb_002284_250 0.1072349039 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
19 Hb_003449_070 0.10753889 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
20 Hb_011202_020 0.1081291223 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011287_080 Hb_011287_080 Hb_118840_030 Hb_118840_030 Hb_011287_080--Hb_118840_030 Hb_000556_220 Hb_000556_220 Hb_011287_080--Hb_000556_220 Hb_061878_010 Hb_061878_010 Hb_011287_080--Hb_061878_010 Hb_000680_110 Hb_000680_110 Hb_011287_080--Hb_000680_110 Hb_041327_010 Hb_041327_010 Hb_011287_080--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_011287_080--Hb_003060_060 Hb_002260_080 Hb_002260_080 Hb_118840_030--Hb_002260_080 Hb_001977_010 Hb_001977_010 Hb_118840_030--Hb_001977_010 Hb_030627_060 Hb_030627_060 Hb_118840_030--Hb_030627_060 Hb_000446_120 Hb_000446_120 Hb_118840_030--Hb_000446_120 Hb_000046_180 Hb_000046_180 Hb_118840_030--Hb_000046_180 Hb_000037_220 Hb_000037_220 Hb_000556_220--Hb_000037_220 Hb_085781_020 Hb_085781_020 Hb_000556_220--Hb_085781_020 Hb_002311_100 Hb_002311_100 Hb_000556_220--Hb_002311_100 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_140627_020 Hb_140627_020 Hb_000556_220--Hb_140627_020 Hb_000556_220--Hb_003060_060 Hb_140049_080 Hb_140049_080 Hb_061878_010--Hb_140049_080 Hb_006355_090 Hb_006355_090 Hb_061878_010--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_061878_010--Hb_000037_220 Hb_004531_120 Hb_004531_120 Hb_000680_110--Hb_004531_120 Hb_001195_470 Hb_001195_470 Hb_000680_110--Hb_001195_470 Hb_000723_220 Hb_000723_220 Hb_000680_110--Hb_000723_220 Hb_000264_350 Hb_000264_350 Hb_000680_110--Hb_000264_350 Hb_000230_260 Hb_000230_260 Hb_000680_110--Hb_000230_260 Hb_002902_080 Hb_002902_080 Hb_000680_110--Hb_002902_080 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050 Hb_000412_010 Hb_000412_010 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_003060_060--Hb_085781_020 Hb_003060_060--Hb_041327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.07328 13.7293 5.6374 11.9933 11.731 17.1796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.9249 1.9084 8.85317 17.6541 10.2646

CAGE analysis