Hb_010775_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig10775: 44466-47045
Sequence    

Annotation

kegg
ID rcu:RCOM_0819800
description Floral homeotic protein APETALA2, putative (EC:1.3.1.74)
nr
ID XP_002525190.1
description Floral homeotic protein APETALA2, putative [Ricinus communis]
swissprot
ID P47927
description Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
trembl
ID B9SGS1
description Floral homeotic protein APETALA2, putative OS=Ricinus communis GN=RCOM_0819800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02348: 44509-45444 , PASA_asmbl_02349: 44573-45007 , PASA_asmbl_02350: 45129-45481 , PASA_asmbl_02351: 45813-46340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010775_020 0.0 transcription factor TF Family: ERF Floral homeotic protein APETALA2, putative [Ricinus communis]
2 Hb_008215_020 0.1469510822 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_025163_020 0.1565790531 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
4 Hb_072201_010 0.1653575676 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
5 Hb_003656_080 0.1680120988 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
6 Hb_185666_010 0.1688243188 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
7 Hb_177195_010 0.1692179443 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]
8 Hb_005701_100 0.1718390892 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
9 Hb_000878_120 0.1733439185 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
10 Hb_000094_230 0.1791174647 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
11 Hb_004531_060 0.1792592515 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
12 Hb_000069_650 0.1854392944 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004884_170 0.186593312 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
14 Hb_000979_070 0.192224728 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
15 Hb_020025_030 0.1945910452 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
16 Hb_000261_340 0.1946048318 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_001950_090 0.195537958 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
18 Hb_021576_090 0.1968828263 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_370 0.2007102546 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
20 Hb_020301_020 0.2023380115 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010775_020 Hb_010775_020 Hb_008215_020 Hb_008215_020 Hb_010775_020--Hb_008215_020 Hb_025163_020 Hb_025163_020 Hb_010775_020--Hb_025163_020 Hb_072201_010 Hb_072201_010 Hb_010775_020--Hb_072201_010 Hb_003656_080 Hb_003656_080 Hb_010775_020--Hb_003656_080 Hb_185666_010 Hb_185666_010 Hb_010775_020--Hb_185666_010 Hb_177195_010 Hb_177195_010 Hb_010775_020--Hb_177195_010 Hb_008215_020--Hb_025163_020 Hb_004531_060 Hb_004531_060 Hb_008215_020--Hb_004531_060 Hb_005701_100 Hb_005701_100 Hb_008215_020--Hb_005701_100 Hb_008215_020--Hb_185666_010 Hb_000069_650 Hb_000069_650 Hb_008215_020--Hb_000069_650 Hb_005116_030 Hb_005116_030 Hb_008215_020--Hb_005116_030 Hb_025163_020--Hb_004531_060 Hb_025163_020--Hb_005701_100 Hb_000890_140 Hb_000890_140 Hb_025163_020--Hb_000890_140 Hb_025163_020--Hb_005116_030 Hb_000397_170 Hb_000397_170 Hb_025163_020--Hb_000397_170 Hb_072201_010--Hb_000069_650 Hb_012150_040 Hb_012150_040 Hb_072201_010--Hb_012150_040 Hb_003847_060 Hb_003847_060 Hb_072201_010--Hb_003847_060 Hb_001950_090 Hb_001950_090 Hb_072201_010--Hb_001950_090 Hb_021576_050 Hb_021576_050 Hb_072201_010--Hb_021576_050 Hb_000317_120 Hb_000317_120 Hb_072201_010--Hb_000317_120 Hb_006588_100 Hb_006588_100 Hb_003656_080--Hb_006588_100 Hb_003656_080--Hb_004531_060 Hb_005332_030 Hb_005332_030 Hb_003656_080--Hb_005332_030 Hb_020025_030 Hb_020025_030 Hb_003656_080--Hb_020025_030 Hb_003656_080--Hb_001950_090 Hb_000140_200 Hb_000140_200 Hb_003656_080--Hb_000140_200 Hb_000979_070 Hb_000979_070 Hb_185666_010--Hb_000979_070 Hb_015934_100 Hb_015934_100 Hb_185666_010--Hb_015934_100 Hb_185666_010--Hb_020025_030 Hb_000504_060 Hb_000504_060 Hb_185666_010--Hb_000504_060 Hb_000094_230 Hb_000094_230 Hb_185666_010--Hb_000094_230 Hb_089140_070 Hb_089140_070 Hb_177195_010--Hb_089140_070 Hb_000098_270 Hb_000098_270 Hb_177195_010--Hb_000098_270 Hb_000289_020 Hb_000289_020 Hb_177195_010--Hb_000289_020 Hb_006810_040 Hb_006810_040 Hb_177195_010--Hb_006810_040 Hb_000878_120 Hb_000878_120 Hb_177195_010--Hb_000878_120 Hb_002028_270 Hb_002028_270 Hb_177195_010--Hb_002028_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0361083 0.40558 0.34957 0.0181128 0.0190178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0910555 0

CAGE analysis