Hb_007108_020

Information

Type -
Description -
Location Contig7108: 12446-17525
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007108_020 0.0 - - -
2 Hb_003081_030 0.2479049427 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
3 Hb_000414_030 0.2560458041 - - -
4 Hb_000413_160 0.2660549365 - - PREDICTED: uncharacterized protein LOC105649406 isoform X2 [Jatropha curcas]
5 Hb_001012_020 0.2774372369 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
6 Hb_007747_190 0.2775978571 - - conserved hypothetical protein [Ricinus communis]
7 Hb_137461_010 0.2786936998 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
8 Hb_028639_050 0.2816811459 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
9 Hb_002078_060 0.2914592069 - - hypothetical protein JCGZ_17943 [Jatropha curcas]
10 Hb_002671_080 0.2934568255 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
11 Hb_007124_010 0.2982288015 - - unnamed protein product [Coffea canephora]
12 Hb_168343_010 0.2986916708 - - sensory transduction histidine kinase, putative [Ricinus communis]
13 Hb_003602_050 0.2988849052 - - zinc binding dehydrogenase, putative [Ricinus communis]
14 Hb_000329_770 0.3012182419 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000563_270 0.3043453141 - - -
16 Hb_001221_510 0.3052238447 - - Protein HVA22, putative [Ricinus communis]
17 Hb_004137_080 0.306031423 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003086_120 0.3061365613 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
19 Hb_032496_020 0.3078478323 - - -
20 Hb_002849_040 0.310554693 - - caax prenyl protease ste24, putative [Ricinus communis]

Gene co-expression network

sample Hb_007108_020 Hb_007108_020 Hb_003081_030 Hb_003081_030 Hb_007108_020--Hb_003081_030 Hb_000414_030 Hb_000414_030 Hb_007108_020--Hb_000414_030 Hb_000413_160 Hb_000413_160 Hb_007108_020--Hb_000413_160 Hb_001012_020 Hb_001012_020 Hb_007108_020--Hb_001012_020 Hb_007747_190 Hb_007747_190 Hb_007108_020--Hb_007747_190 Hb_137461_010 Hb_137461_010 Hb_007108_020--Hb_137461_010 Hb_010997_020 Hb_010997_020 Hb_003081_030--Hb_010997_020 Hb_000529_250 Hb_000529_250 Hb_003081_030--Hb_000529_250 Hb_003602_050 Hb_003602_050 Hb_003081_030--Hb_003602_050 Hb_000563_270 Hb_000563_270 Hb_003081_030--Hb_000563_270 Hb_000012_460 Hb_000012_460 Hb_003081_030--Hb_000012_460 Hb_000878_130 Hb_000878_130 Hb_000414_030--Hb_000878_130 Hb_032496_020 Hb_032496_020 Hb_000414_030--Hb_032496_020 Hb_001105_190 Hb_001105_190 Hb_000414_030--Hb_001105_190 Hb_001054_130 Hb_001054_130 Hb_000414_030--Hb_001054_130 Hb_000329_770 Hb_000329_770 Hb_000414_030--Hb_000329_770 Hb_015057_010 Hb_015057_010 Hb_000414_030--Hb_015057_010 Hb_075136_010 Hb_075136_010 Hb_000413_160--Hb_075136_010 Hb_002849_040 Hb_002849_040 Hb_000413_160--Hb_002849_040 Hb_005656_050 Hb_005656_050 Hb_000413_160--Hb_005656_050 Hb_000493_010 Hb_000493_010 Hb_000413_160--Hb_000493_010 Hb_006502_080 Hb_006502_080 Hb_000413_160--Hb_006502_080 Hb_000648_030 Hb_000648_030 Hb_000413_160--Hb_000648_030 Hb_005935_010 Hb_005935_010 Hb_001012_020--Hb_005935_010 Hb_157568_010 Hb_157568_010 Hb_001012_020--Hb_157568_010 Hb_001221_510 Hb_001221_510 Hb_001012_020--Hb_001221_510 Hb_135403_010 Hb_135403_010 Hb_001012_020--Hb_135403_010 Hb_123202_010 Hb_123202_010 Hb_001012_020--Hb_123202_010 Hb_002671_080 Hb_002671_080 Hb_001012_020--Hb_002671_080 Hb_007747_190--Hb_003602_050 Hb_003086_120 Hb_003086_120 Hb_007747_190--Hb_003086_120 Hb_000703_260 Hb_000703_260 Hb_007747_190--Hb_000703_260 Hb_000227_130 Hb_000227_130 Hb_007747_190--Hb_000227_130 Hb_150379_010 Hb_150379_010 Hb_007747_190--Hb_150379_010 Hb_007747_190--Hb_075136_010 Hb_005916_030 Hb_005916_030 Hb_137461_010--Hb_005916_030 Hb_049944_010 Hb_049944_010 Hb_137461_010--Hb_049944_010 Hb_000575_080 Hb_000575_080 Hb_137461_010--Hb_000575_080 Hb_075964_010 Hb_075964_010 Hb_137461_010--Hb_075964_010 Hb_000062_420 Hb_000062_420 Hb_137461_010--Hb_000062_420 Hb_001912_070 Hb_001912_070 Hb_137461_010--Hb_001912_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196568 0.174556 0 0 0 1.5012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.701687 0.367521 0.28623 0.0802047 0.313571

CAGE analysis