Hb_001105_190

Information

Type -
Description -
Location Contig1105: 146729-150211
Sequence    

Annotation

kegg
ID rcu:RCOM_1342590
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_002515157.1
description peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
swissprot
ID P34791
description Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1
trembl
ID B9RN18
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_1342590 PE=3 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_190 0.0 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
2 Hb_006570_020 0.1533996232 - - -
3 Hb_002107_160 0.1566674575 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
4 Hb_000563_210 0.1626854204 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
5 Hb_000573_070 0.1637287665 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
6 Hb_001054_130 0.1645172816 - - Protein SSU72, putative [Ricinus communis]
7 Hb_000076_120 0.1686448755 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
8 Hb_000696_300 0.1692329197 - - hypothetical protein EUGRSUZ_J01717 [Eucalyptus grandis]
9 Hb_000065_080 0.1709759279 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
10 Hb_000326_050 0.1733809343 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
11 Hb_003544_090 0.1737235283 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
12 Hb_009133_010 0.174211496 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
13 Hb_002284_090 0.1755429508 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
14 Hb_015026_120 0.1760812797 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
15 Hb_000997_270 0.1765678926 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
16 Hb_134364_010 0.1780775174 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
17 Hb_000414_030 0.1789679963 - - -
18 Hb_000627_030 0.1794028946 - - amine oxidase, putative [Ricinus communis]
19 Hb_000157_030 0.180299249 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
20 Hb_076787_010 0.1803016404 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001105_190 Hb_001105_190 Hb_006570_020 Hb_006570_020 Hb_001105_190--Hb_006570_020 Hb_002107_160 Hb_002107_160 Hb_001105_190--Hb_002107_160 Hb_000563_210 Hb_000563_210 Hb_001105_190--Hb_000563_210 Hb_000573_070 Hb_000573_070 Hb_001105_190--Hb_000573_070 Hb_001054_130 Hb_001054_130 Hb_001105_190--Hb_001054_130 Hb_000076_120 Hb_000076_120 Hb_001105_190--Hb_000076_120 Hb_010449_020 Hb_010449_020 Hb_006570_020--Hb_010449_020 Hb_000270_360 Hb_000270_360 Hb_006570_020--Hb_000270_360 Hb_027892_060 Hb_027892_060 Hb_006570_020--Hb_027892_060 Hb_004070_030 Hb_004070_030 Hb_006570_020--Hb_004070_030 Hb_015026_120 Hb_015026_120 Hb_006570_020--Hb_015026_120 Hb_001158_220 Hb_001158_220 Hb_002107_160--Hb_001158_220 Hb_000157_030 Hb_000157_030 Hb_002107_160--Hb_000157_030 Hb_010691_060 Hb_010691_060 Hb_002107_160--Hb_010691_060 Hb_002495_040 Hb_002495_040 Hb_002107_160--Hb_002495_040 Hb_000120_500 Hb_000120_500 Hb_002107_160--Hb_000120_500 Hb_000465_430 Hb_000465_430 Hb_002107_160--Hb_000465_430 Hb_001484_060 Hb_001484_060 Hb_000563_210--Hb_001484_060 Hb_000563_210--Hb_000076_120 Hb_009775_050 Hb_009775_050 Hb_000563_210--Hb_009775_050 Hb_000053_130 Hb_000053_130 Hb_000563_210--Hb_000053_130 Hb_001341_050 Hb_001341_050 Hb_000563_210--Hb_001341_050 Hb_001124_120 Hb_001124_120 Hb_000563_210--Hb_001124_120 Hb_001377_150 Hb_001377_150 Hb_000573_070--Hb_001377_150 Hb_004204_070 Hb_004204_070 Hb_000573_070--Hb_004204_070 Hb_000573_070--Hb_010449_020 Hb_010661_030 Hb_010661_030 Hb_000573_070--Hb_010661_030 Hb_002272_250 Hb_002272_250 Hb_000573_070--Hb_002272_250 Hb_000000_160 Hb_000000_160 Hb_000573_070--Hb_000000_160 Hb_004055_140 Hb_004055_140 Hb_001054_130--Hb_004055_140 Hb_022461_010 Hb_022461_010 Hb_001054_130--Hb_022461_010 Hb_001054_130--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_001054_130--Hb_003266_050 Hb_000057_200 Hb_000057_200 Hb_001054_130--Hb_000057_200 Hb_009117_030 Hb_009117_030 Hb_001054_130--Hb_009117_030 Hb_000058_100 Hb_000058_100 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_004310_130 Hb_004310_130 Hb_000076_120--Hb_004310_130 Hb_000076_120--Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000076_120--Hb_150360_030 Hb_007218_080 Hb_007218_080 Hb_000076_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.980174 0.184241 0.520631 0.0469313 0.369481 1.38227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03514 0.610473 0.276863 0.267399 0.307319

CAGE analysis