Hb_000227_130

Information

Type -
Description -
Location Contig227: 111279-112265
Sequence    

Annotation

kegg
ID rcu:RCOM_0913560
description peroxiredoxin, putative (EC:1.11.1.15)
nr
ID XP_012069555.1
description PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
swissprot
ID Q9M7T0
description Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2
trembl
ID A0A067KVF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02125 PE=4 SV=1
Gene Ontology
ID GO:0016491
description peroxiredoxin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_130 0.0 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
2 Hb_001950_120 0.1939391015 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
3 Hb_116349_170 0.2074159088 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
4 Hb_003680_070 0.2268533522 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
5 Hb_000487_320 0.2273257328 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
6 Hb_000449_040 0.230577098 - - protein with unknown function [Ricinus communis]
7 Hb_003226_160 0.2318346869 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
8 Hb_098315_120 0.2329082294 - - -
9 Hb_000261_460 0.2350828273 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
10 Hb_001481_180 0.2370654622 - - plasma membrane H+-ATPase [Hevea brasiliensis]
11 Hb_002007_050 0.2372701179 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
12 Hb_001552_080 0.2399459863 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012265_010 0.2402775599 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
14 Hb_007747_190 0.2436104696 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003349_070 0.2458533981 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
16 Hb_008847_020 0.2459754574 - - 40S ribosomal protein S17C [Hevea brasiliensis]
17 Hb_000847_140 0.2469646394 - - -
18 Hb_001769_100 0.2477912936 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
19 Hb_008318_010 0.2496639811 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
20 Hb_003086_120 0.2504565264 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_130 Hb_000227_130 Hb_001950_120 Hb_001950_120 Hb_000227_130--Hb_001950_120 Hb_116349_170 Hb_116349_170 Hb_000227_130--Hb_116349_170 Hb_003680_070 Hb_003680_070 Hb_000227_130--Hb_003680_070 Hb_000487_320 Hb_000487_320 Hb_000227_130--Hb_000487_320 Hb_000449_040 Hb_000449_040 Hb_000227_130--Hb_000449_040 Hb_003226_160 Hb_003226_160 Hb_000227_130--Hb_003226_160 Hb_001769_100 Hb_001769_100 Hb_001950_120--Hb_001769_100 Hb_012265_010 Hb_012265_010 Hb_001950_120--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001950_120--Hb_003623_050 Hb_001950_120--Hb_000449_040 Hb_000645_190 Hb_000645_190 Hb_001950_120--Hb_000645_190 Hb_008318_010 Hb_008318_010 Hb_001950_120--Hb_008318_010 Hb_000261_460 Hb_000261_460 Hb_116349_170--Hb_000261_460 Hb_011139_020 Hb_011139_020 Hb_116349_170--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_116349_170--Hb_000362_210 Hb_116349_170--Hb_000449_040 Hb_100777_010 Hb_100777_010 Hb_116349_170--Hb_100777_010 Hb_007021_020 Hb_007021_020 Hb_116349_170--Hb_007021_020 Hb_003680_070--Hb_000261_460 Hb_001538_100 Hb_001538_100 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_002781_020 Hb_002781_020 Hb_003680_070--Hb_002781_020 Hb_001754_010 Hb_001754_010 Hb_003680_070--Hb_001754_010 Hb_001552_080 Hb_001552_080 Hb_000487_320--Hb_001552_080 Hb_004005_010 Hb_004005_010 Hb_000487_320--Hb_004005_010 Hb_000487_320--Hb_000449_040 Hb_001053_160 Hb_001053_160 Hb_000487_320--Hb_001053_160 Hb_000134_020 Hb_000134_020 Hb_000487_320--Hb_000134_020 Hb_000487_320--Hb_000645_190 Hb_000449_040--Hb_002781_020 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000449_040--Hb_000134_020 Hb_005333_150 Hb_005333_150 Hb_003226_160--Hb_005333_150 Hb_002896_080 Hb_002896_080 Hb_003226_160--Hb_002896_080 Hb_000243_140 Hb_000243_140 Hb_003226_160--Hb_000243_140 Hb_001863_090 Hb_001863_090 Hb_003226_160--Hb_001863_090 Hb_000907_170 Hb_000907_170 Hb_003226_160--Hb_000907_170 Hb_002798_010 Hb_002798_010 Hb_003226_160--Hb_002798_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91326 0 0.0664089 0 0.557724 3.85435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60549 7.86415 1.76071 3.9107 0.552404

CAGE analysis