Hb_000563_270

Information

Type -
Description -
Location Contig563: 169110-170987
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_270 0.0 - - -
2 Hb_003602_050 0.2140294551 - - zinc binding dehydrogenase, putative [Ricinus communis]
3 Hb_000348_040 0.2347379362 - - -
4 Hb_000847_140 0.2355206606 - - -
5 Hb_015091_010 0.2382249391 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_010997_020 0.2444240222 - - -
7 Hb_063511_010 0.2476531835 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
8 Hb_007532_040 0.2486994197 - - -
9 Hb_006501_030 0.2509121751 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
10 Hb_004297_030 0.2570879243 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
11 Hb_015978_070 0.257371975 - - -
12 Hb_000832_240 0.2575392326 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012305_120 0.2587012194 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
14 Hb_004586_450 0.2620224784 - - -
15 Hb_003086_120 0.2631064343 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
16 Hb_030765_010 0.2638239298 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
17 Hb_000048_100 0.2651010927 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003081_030 0.2663310104 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
19 Hb_000367_170 0.266369191 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
20 Hb_020247_060 0.2690760701 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000563_270 Hb_000563_270 Hb_003602_050 Hb_003602_050 Hb_000563_270--Hb_003602_050 Hb_000348_040 Hb_000348_040 Hb_000563_270--Hb_000348_040 Hb_000847_140 Hb_000847_140 Hb_000563_270--Hb_000847_140 Hb_015091_010 Hb_015091_010 Hb_000563_270--Hb_015091_010 Hb_010997_020 Hb_010997_020 Hb_000563_270--Hb_010997_020 Hb_063511_010 Hb_063511_010 Hb_000563_270--Hb_063511_010 Hb_007747_190 Hb_007747_190 Hb_003602_050--Hb_007747_190 Hb_003602_050--Hb_000847_140 Hb_012305_120 Hb_012305_120 Hb_003602_050--Hb_012305_120 Hb_007532_040 Hb_007532_040 Hb_003602_050--Hb_007532_040 Hb_003086_120 Hb_003086_120 Hb_003602_050--Hb_003086_120 Hb_006501_030 Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_000348_040--Hb_015091_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100 Hb_000847_140--Hb_012305_120 Hb_008699_040 Hb_008699_040 Hb_000847_140--Hb_008699_040 Hb_000039_170 Hb_000039_170 Hb_000847_140--Hb_000039_170 Hb_015978_070 Hb_015978_070 Hb_000847_140--Hb_015978_070 Hb_004474_010 Hb_004474_010 Hb_000847_140--Hb_004474_010 Hb_001623_430 Hb_001623_430 Hb_000847_140--Hb_001623_430 Hb_015091_010--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_015091_010--Hb_001951_280 Hb_015091_010--Hb_004297_030 Hb_015091_010--Hb_088496_010 Hb_015091_010--Hb_006501_030 Hb_003081_030 Hb_003081_030 Hb_010997_020--Hb_003081_030 Hb_000529_250 Hb_000529_250 Hb_010997_020--Hb_000529_250 Hb_171469_010 Hb_171469_010 Hb_010997_020--Hb_171469_010 Hb_007403_090 Hb_007403_090 Hb_010997_020--Hb_007403_090 Hb_165739_010 Hb_165739_010 Hb_010997_020--Hb_165739_010 Hb_063511_010--Hb_001951_280 Hb_169488_010 Hb_169488_010 Hb_063511_010--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_063511_010--Hb_003702_050 Hb_063511_010--Hb_006501_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0348853 0 0 0 0.0260649 0.884006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.766606 0.703282 0.0912057 0.0203047 0.101246

CAGE analysis