Hb_165739_010

Information

Type -
Description -
Location Contig165739: 77-1204
Sequence    

Annotation

kegg
ID rcu:RCOM_0516810
description DNA binding protein, putative
nr
ID XP_002528738.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SJN0
description Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1
trembl
ID B9SRW9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0516810 PE=4 SV=1
Gene Ontology
ID GO:0097159
description basic-leucine zipper transcription factor family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165739_010 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000630_040 0.2089833146 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
3 Hb_002054_010 0.20982076 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
4 Hb_000310_030 0.2139774288 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
5 Hb_092100_020 0.2192096031 - - strictosidine synthase, putative [Ricinus communis]
6 Hb_004448_020 0.2249175484 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
7 Hb_000529_250 0.2317538204 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
8 Hb_005941_010 0.234607526 - - PREDICTED: protein SAND [Jatropha curcas]
9 Hb_004965_070 0.2386546326 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
10 Hb_023226_090 0.2387310811 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
11 Hb_000984_190 0.2389658534 - - -
12 Hb_157568_010 0.2413506124 - - MATE efflux family protein, putative [Theobroma cacao]
13 Hb_117134_010 0.241822887 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
14 Hb_004787_090 0.2434919482 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
15 Hb_002735_060 0.2463317617 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
16 Hb_000375_310 0.2470430839 - - hypothetical protein JCGZ_18643 [Jatropha curcas]
17 Hb_071130_030 0.2487078992 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
18 Hb_112064_020 0.2487863027 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
19 Hb_001369_050 0.250613719 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
20 Hb_000491_090 0.2519670973 - - hypothetical protein B456_008G219400 [Gossypium raimondii]

Gene co-expression network

sample Hb_165739_010 Hb_165739_010 Hb_000630_040 Hb_000630_040 Hb_165739_010--Hb_000630_040 Hb_002054_010 Hb_002054_010 Hb_165739_010--Hb_002054_010 Hb_000310_030 Hb_000310_030 Hb_165739_010--Hb_000310_030 Hb_092100_020 Hb_092100_020 Hb_165739_010--Hb_092100_020 Hb_004448_020 Hb_004448_020 Hb_165739_010--Hb_004448_020 Hb_000529_250 Hb_000529_250 Hb_165739_010--Hb_000529_250 Hb_000630_040--Hb_002054_010 Hb_000630_070 Hb_000630_070 Hb_000630_040--Hb_000630_070 Hb_005739_010 Hb_005739_010 Hb_000630_040--Hb_005739_010 Hb_101832_010 Hb_101832_010 Hb_000630_040--Hb_101832_010 Hb_000316_050 Hb_000316_050 Hb_000630_040--Hb_000316_050 Hb_002900_140 Hb_002900_140 Hb_000630_040--Hb_002900_140 Hb_000331_440 Hb_000331_440 Hb_002054_010--Hb_000331_440 Hb_001053_180 Hb_001053_180 Hb_002054_010--Hb_001053_180 Hb_002054_010--Hb_000316_050 Hb_000096_090 Hb_000096_090 Hb_002054_010--Hb_000096_090 Hb_002054_010--Hb_101832_010 Hb_000032_040 Hb_000032_040 Hb_000310_030--Hb_000032_040 Hb_000733_030 Hb_000733_030 Hb_000310_030--Hb_000733_030 Hb_000567_170 Hb_000567_170 Hb_000310_030--Hb_000567_170 Hb_000563_560 Hb_000563_560 Hb_000310_030--Hb_000563_560 Hb_010344_040 Hb_010344_040 Hb_000310_030--Hb_010344_040 Hb_002119_120 Hb_002119_120 Hb_000310_030--Hb_002119_120 Hb_023226_090 Hb_023226_090 Hb_092100_020--Hb_023226_090 Hb_001369_050 Hb_001369_050 Hb_092100_020--Hb_001369_050 Hb_157022_020 Hb_157022_020 Hb_092100_020--Hb_157022_020 Hb_084849_020 Hb_084849_020 Hb_092100_020--Hb_084849_020 Hb_003050_230 Hb_003050_230 Hb_092100_020--Hb_003050_230 Hb_117134_010 Hb_117134_010 Hb_092100_020--Hb_117134_010 Hb_000491_090 Hb_000491_090 Hb_004448_020--Hb_000491_090 Hb_011671_220 Hb_011671_220 Hb_004448_020--Hb_011671_220 Hb_000963_190 Hb_000963_190 Hb_004448_020--Hb_000963_190 Hb_015057_010 Hb_015057_010 Hb_004448_020--Hb_015057_010 Hb_005656_050 Hb_005656_050 Hb_004448_020--Hb_005656_050 Hb_009558_020 Hb_009558_020 Hb_004448_020--Hb_009558_020 Hb_017895_030 Hb_017895_030 Hb_000529_250--Hb_017895_030 Hb_001047_130 Hb_001047_130 Hb_000529_250--Hb_001047_130 Hb_001357_130 Hb_001357_130 Hb_000529_250--Hb_001357_130 Hb_000529_250--Hb_000310_030 Hb_003081_030 Hb_003081_030 Hb_000529_250--Hb_003081_030 Hb_004965_070 Hb_004965_070 Hb_000529_250--Hb_004965_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.339097 0.114515 0.161199 0.13751 0.864688 1.59474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49666 0.55008 1.08366 0.0689442 0.496266

CAGE analysis