Hb_000529_250

Information

Type -
Description -
Location Contig529: 305247-307624
Sequence    

Annotation

kegg
ID rcu:RCOM_0270690
description catalytic, putative
nr
ID XP_012081670.1
description PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S8F9
description Nicotinamidase 1 OS=Arabidopsis thaliana GN=NIC1 PE=1 SV=1
trembl
ID A0A067KD75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18704 PE=4 SV=1
Gene Ontology
ID GO:0016787
description isochorismatase family protein pnca

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_250 0.0 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
2 Hb_017895_030 0.1886277498 transcription factor TF Family: C2H2 -
3 Hb_001047_130 0.2133503387 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
4 Hb_001357_130 0.2139908801 - - hypothetical protein JCGZ_00933 [Jatropha curcas]
5 Hb_000310_030 0.2251279232 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
6 Hb_003081_030 0.2272687976 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
7 Hb_004965_070 0.2311922704 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
8 Hb_165739_010 0.2317538204 - - DNA binding protein, putative [Ricinus communis]
9 Hb_104010_010 0.2358979607 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
10 Hb_004650_100 0.2365447807 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
11 Hb_000032_040 0.2385109527 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_099069_010 0.2417577464 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
13 Hb_000098_220 0.2426334394 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
14 Hb_001741_090 0.2463720468 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
15 Hb_000169_140 0.2464829159 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
16 Hb_000529_220 0.2467493277 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000545_170 0.2475602743 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
18 Hb_000091_100 0.2500873288 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_011004_010 0.2505447108 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
20 Hb_004738_010 0.2509765544 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000529_250 Hb_000529_250 Hb_017895_030 Hb_017895_030 Hb_000529_250--Hb_017895_030 Hb_001047_130 Hb_001047_130 Hb_000529_250--Hb_001047_130 Hb_001357_130 Hb_001357_130 Hb_000529_250--Hb_001357_130 Hb_000310_030 Hb_000310_030 Hb_000529_250--Hb_000310_030 Hb_003081_030 Hb_003081_030 Hb_000529_250--Hb_003081_030 Hb_004965_070 Hb_004965_070 Hb_000529_250--Hb_004965_070 Hb_003680_070 Hb_003680_070 Hb_017895_030--Hb_003680_070 Hb_001754_010 Hb_001754_010 Hb_017895_030--Hb_001754_010 Hb_001008_010 Hb_001008_010 Hb_017895_030--Hb_001008_010 Hb_010344_040 Hb_010344_040 Hb_017895_030--Hb_010344_040 Hb_000333_090 Hb_000333_090 Hb_017895_030--Hb_000333_090 Hb_017895_030--Hb_000310_030 Hb_000120_360 Hb_000120_360 Hb_001047_130--Hb_000120_360 Hb_001741_090 Hb_001741_090 Hb_001047_130--Hb_001741_090 Hb_000545_170 Hb_000545_170 Hb_001047_130--Hb_000545_170 Hb_000175_610 Hb_000175_610 Hb_001047_130--Hb_000175_610 Hb_104010_010 Hb_104010_010 Hb_001047_130--Hb_104010_010 Hb_000563_560 Hb_000563_560 Hb_001047_130--Hb_000563_560 Hb_000107_070 Hb_000107_070 Hb_001357_130--Hb_000107_070 Hb_001828_080 Hb_001828_080 Hb_001357_130--Hb_001828_080 Hb_002843_070 Hb_002843_070 Hb_001357_130--Hb_002843_070 Hb_001780_070 Hb_001780_070 Hb_001357_130--Hb_001780_070 Hb_075449_050 Hb_075449_050 Hb_001357_130--Hb_075449_050 Hb_000032_040 Hb_000032_040 Hb_000310_030--Hb_000032_040 Hb_000733_030 Hb_000733_030 Hb_000310_030--Hb_000733_030 Hb_000567_170 Hb_000567_170 Hb_000310_030--Hb_000567_170 Hb_000310_030--Hb_000563_560 Hb_000310_030--Hb_010344_040 Hb_002119_120 Hb_002119_120 Hb_000310_030--Hb_002119_120 Hb_010997_020 Hb_010997_020 Hb_003081_030--Hb_010997_020 Hb_003602_050 Hb_003602_050 Hb_003081_030--Hb_003602_050 Hb_007108_020 Hb_007108_020 Hb_003081_030--Hb_007108_020 Hb_000563_270 Hb_000563_270 Hb_003081_030--Hb_000563_270 Hb_000012_460 Hb_000012_460 Hb_003081_030--Hb_000012_460 Hb_003732_010 Hb_003732_010 Hb_004965_070--Hb_003732_010 Hb_000700_130 Hb_000700_130 Hb_004965_070--Hb_000700_130 Hb_000340_260 Hb_000340_260 Hb_004965_070--Hb_000340_260 Hb_001832_010 Hb_001832_010 Hb_004965_070--Hb_001832_010 Hb_117134_010 Hb_117134_010 Hb_004965_070--Hb_117134_010 Hb_004738_010 Hb_004738_010 Hb_004965_070--Hb_004738_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35856 0.244645 0.39621 0.258377 0.384222 5.64357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6702 5.11165 6.10701 1.58226 2.40553

CAGE analysis