Hb_001357_130

Information

Type -
Description -
Location Contig1357: 100660-101205
Sequence    

Annotation

kegg
ID rcu:RCOM_0753050
description hypothetical protein
nr
ID KDP39176.1
description hypothetical protein JCGZ_00933 [Jatropha curcas]
swissprot
ID Q9C6P6
description Stigma-specific STIG1-like protein 4 OS=Arabidopsis thaliana GN=At1g50650 PE=3 SV=1
trembl
ID A0A067KSI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00933 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_130 0.0 - - hypothetical protein JCGZ_00933 [Jatropha curcas]
2 Hb_000529_250 0.2139908801 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
3 Hb_000107_070 0.2271615141 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
4 Hb_001828_080 0.2354162075 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
5 Hb_002843_070 0.2417494331 - - unknown [Lotus japonicus]
6 Hb_001780_070 0.2469450373 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
7 Hb_075449_050 0.2589217406 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
8 Hb_004738_010 0.2598685024 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
9 Hb_002000_110 0.2609105955 - - ASR-like protein 2 [Hevea brasiliensis]
10 Hb_001741_090 0.2619939656 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
11 Hb_001035_040 0.2667266944 - - unnamed protein product [Coffea canephora]
12 Hb_000331_440 0.2682105868 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
13 Hb_165739_010 0.269366182 - - DNA binding protein, putative [Ricinus communis]
14 Hb_005892_060 0.2699189959 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
15 Hb_026428_010 0.2717886154 - - copper transport protein ATOX1 [Hevea brasiliensis]
16 Hb_002235_230 0.2737300987 - - latex abundant protein 1 [Hevea brasiliensis]
17 Hb_004108_090 0.2739598465 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
18 Hb_074197_010 0.2746534079 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
19 Hb_000270_410 0.2749420556 - - -
20 Hb_002054_010 0.2749536493 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_130 Hb_001357_130 Hb_000529_250 Hb_000529_250 Hb_001357_130--Hb_000529_250 Hb_000107_070 Hb_000107_070 Hb_001357_130--Hb_000107_070 Hb_001828_080 Hb_001828_080 Hb_001357_130--Hb_001828_080 Hb_002843_070 Hb_002843_070 Hb_001357_130--Hb_002843_070 Hb_001780_070 Hb_001780_070 Hb_001357_130--Hb_001780_070 Hb_075449_050 Hb_075449_050 Hb_001357_130--Hb_075449_050 Hb_017895_030 Hb_017895_030 Hb_000529_250--Hb_017895_030 Hb_001047_130 Hb_001047_130 Hb_000529_250--Hb_001047_130 Hb_000310_030 Hb_000310_030 Hb_000529_250--Hb_000310_030 Hb_003081_030 Hb_003081_030 Hb_000529_250--Hb_003081_030 Hb_004965_070 Hb_004965_070 Hb_000529_250--Hb_004965_070 Hb_000107_070--Hb_075449_050 Hb_023214_010 Hb_023214_010 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_002000_110 Hb_002000_110 Hb_000107_070--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_000331_440 Hb_000331_440 Hb_001828_080--Hb_000331_440 Hb_001439_170 Hb_001439_170 Hb_001828_080--Hb_001439_170 Hb_000012_130 Hb_000012_130 Hb_001828_080--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_001828_080--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_001828_080--Hb_002119_120 Hb_000735_130 Hb_000735_130 Hb_001828_080--Hb_000735_130 Hb_071947_010 Hb_071947_010 Hb_002843_070--Hb_071947_010 Hb_008948_100 Hb_008948_100 Hb_002843_070--Hb_008948_100 Hb_002843_070--Hb_004738_010 Hb_002027_400 Hb_002027_400 Hb_002843_070--Hb_002027_400 Hb_001863_480 Hb_001863_480 Hb_002843_070--Hb_001863_480 Hb_000539_030 Hb_000539_030 Hb_002843_070--Hb_000539_030 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001780_070--Hb_001741_090 Hb_001780_070--Hb_075449_050 Hb_001780_070--Hb_000107_070 Hb_075449_050--Hb_002000_110 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_075449_050--Hb_023214_010 Hb_075449_050--Hb_001741_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.477517 0 0.158087 0 0.0503758 0.395513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98181 0.274804 0.631182 0.0378019 0.174375

CAGE analysis