Hb_007403_090

Information

Type -
Description -
Location Contig7403: 67807-69946
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007403_090 0.0 - - -
2 Hb_034579_030 0.1456803762 - - -
3 Hb_005656_050 0.1930678557 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
4 Hb_001173_040 0.2119099136 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_002539_090 0.2171467755 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
6 Hb_001008_010 0.2190856636 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
7 Hb_004448_020 0.2202526832 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_001388_050 0.2212545135 - - -
9 Hb_000313_010 0.2215519817 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_002374_460 0.2234173055 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000684_160 0.2248654048 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
12 Hb_000672_120 0.2272907191 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
13 Hb_001437_230 0.2292988526 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
14 Hb_001357_080 0.2326699269 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
15 Hb_116264_010 0.2379473197 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
16 Hb_001221_510 0.2380665634 - - Protein HVA22, putative [Ricinus communis]
17 Hb_003964_100 0.2412272532 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
18 Hb_001258_080 0.2432273458 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
19 Hb_000751_130 0.2433621687 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
20 Hb_002028_130 0.2443923101 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007403_090 Hb_007403_090 Hb_034579_030 Hb_034579_030 Hb_007403_090--Hb_034579_030 Hb_005656_050 Hb_005656_050 Hb_007403_090--Hb_005656_050 Hb_001173_040 Hb_001173_040 Hb_007403_090--Hb_001173_040 Hb_002539_090 Hb_002539_090 Hb_007403_090--Hb_002539_090 Hb_001008_010 Hb_001008_010 Hb_007403_090--Hb_001008_010 Hb_004448_020 Hb_004448_020 Hb_007403_090--Hb_004448_020 Hb_034579_030--Hb_005656_050 Hb_001357_080 Hb_001357_080 Hb_034579_030--Hb_001357_080 Hb_034579_030--Hb_002539_090 Hb_000313_010 Hb_000313_010 Hb_034579_030--Hb_000313_010 Hb_000672_120 Hb_000672_120 Hb_034579_030--Hb_000672_120 Hb_000380_010 Hb_000380_010 Hb_005656_050--Hb_000380_010 Hb_007012_020 Hb_007012_020 Hb_005656_050--Hb_007012_020 Hb_007317_060 Hb_007317_060 Hb_005656_050--Hb_007317_060 Hb_022092_090 Hb_022092_090 Hb_005656_050--Hb_022092_090 Hb_005117_010 Hb_005117_010 Hb_005656_050--Hb_005117_010 Hb_000963_190 Hb_000963_190 Hb_005656_050--Hb_000963_190 Hb_001173_040--Hb_002539_090 Hb_001258_080 Hb_001258_080 Hb_001173_040--Hb_001258_080 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_000172_030 Hb_000172_030 Hb_001173_040--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_001173_040--Hb_000751_130 Hb_001173_040--Hb_001008_010 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_002539_090--Hb_001357_080 Hb_002539_090--Hb_000172_030 Hb_001629_100 Hb_001629_100 Hb_001008_010--Hb_001629_100 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_010172_030 Hb_010172_030 Hb_001008_010--Hb_010172_030 Hb_001008_010--Hb_002539_090 Hb_001754_010 Hb_001754_010 Hb_001008_010--Hb_001754_010 Hb_000491_090 Hb_000491_090 Hb_004448_020--Hb_000491_090 Hb_011671_220 Hb_011671_220 Hb_004448_020--Hb_011671_220 Hb_004448_020--Hb_000963_190 Hb_015057_010 Hb_015057_010 Hb_004448_020--Hb_015057_010 Hb_004448_020--Hb_005656_050 Hb_009558_020 Hb_009558_020 Hb_004448_020--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0588246 0 0 0.156078 0.450728 0.785893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.827003 0.974525 0.731292 0.0450834 0.40338

CAGE analysis