Hb_006198_030

Information

Type -
Description -
Location Contig6198: 18865-20292
Sequence    

Annotation

kegg
ID rcu:RCOM_1721300
description hypothetical protein
nr
ID XP_002521118.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S549
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003120_020 0.1065400505 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
3 Hb_009193_020 0.1086306638 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
4 Hb_000808_130 0.1091550726 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_000676_320 0.1102321435 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
6 Hb_000648_070 0.1113023208 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
7 Hb_002249_090 0.1177338251 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_001141_340 0.1220836652 - - PREDICTED: cysteine synthase [Jatropha curcas]
9 Hb_001287_020 0.122407191 - - SulA [Manihot esculenta]
10 Hb_023344_090 0.1242472731 - - Photosystem II reaction center W protein, putative [Ricinus communis]
11 Hb_000116_320 0.1293572773 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_003602_100 0.1295384949 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_000510_180 0.1298567268 - - unknown [Lotus japonicus]
14 Hb_013726_060 0.1303702118 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
15 Hb_000625_080 0.1313471463 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_005000_110 0.131387664 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
17 Hb_000174_080 0.1314592557 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
18 Hb_000881_070 0.1315204228 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000083_180 0.132739577 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
20 Hb_001343_030 0.136566605 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006198_030 Hb_006198_030 Hb_003120_020 Hb_003120_020 Hb_006198_030--Hb_003120_020 Hb_009193_020 Hb_009193_020 Hb_006198_030--Hb_009193_020 Hb_000808_130 Hb_000808_130 Hb_006198_030--Hb_000808_130 Hb_000676_320 Hb_000676_320 Hb_006198_030--Hb_000676_320 Hb_000648_070 Hb_000648_070 Hb_006198_030--Hb_000648_070 Hb_002249_090 Hb_002249_090 Hb_006198_030--Hb_002249_090 Hb_000049_100 Hb_000049_100 Hb_003120_020--Hb_000049_100 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_010326_020 Hb_010326_020 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_000625_080 Hb_000625_080 Hb_009193_020--Hb_000625_080 Hb_005276_080 Hb_005276_080 Hb_009193_020--Hb_005276_080 Hb_009193_020--Hb_000676_320 Hb_013726_060 Hb_013726_060 Hb_009193_020--Hb_013726_060 Hb_000510_180 Hb_000510_180 Hb_009193_020--Hb_000510_180 Hb_001717_060 Hb_001717_060 Hb_009193_020--Hb_001717_060 Hb_005000_110 Hb_005000_110 Hb_000808_130--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_000808_130--Hb_001343_030 Hb_017434_040 Hb_017434_040 Hb_000808_130--Hb_017434_040 Hb_023344_090 Hb_023344_090 Hb_000808_130--Hb_023344_090 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030 Hb_000083_180 Hb_000083_180 Hb_000676_320--Hb_000083_180 Hb_000676_320--Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_000676_320--Hb_001006_160 Hb_000450_050 Hb_000450_050 Hb_000676_320--Hb_000450_050 Hb_003020_120 Hb_003020_120 Hb_000676_320--Hb_003020_120 Hb_001287_020 Hb_001287_020 Hb_000648_070--Hb_001287_020 Hb_000648_070--Hb_002249_090 Hb_000648_070--Hb_000510_180 Hb_002215_030 Hb_002215_030 Hb_000648_070--Hb_002215_030 Hb_028227_060 Hb_028227_060 Hb_000648_070--Hb_028227_060 Hb_002007_120 Hb_002007_120 Hb_000648_070--Hb_002007_120 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0687069 3.17253 0.763758 0 0.0679242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0588909 0.0926235 0.0845182 0.0186831 3.75462

CAGE analysis