Hb_005839_140

Information

Type -
Description -
Location Contig5839: 98714-102976
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_140 0.0 - - -
2 Hb_002157_050 0.1316783463 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
3 Hb_000317_060 0.1386918484 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
4 Hb_009620_030 0.1417017927 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
5 Hb_110482_010 0.14258372 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
6 Hb_003529_130 0.1445235867 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
7 Hb_001953_150 0.1468588596 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
8 Hb_005260_040 0.1490751368 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
9 Hb_164458_010 0.1499506149 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000120_620 0.1509247622 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
11 Hb_005016_060 0.1519171094 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000300_360 0.1533920727 - - PREDICTED: exosome component 10 [Jatropha curcas]
13 Hb_080147_040 0.1554312492 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
14 Hb_003097_180 0.1557224465 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
15 Hb_000922_140 0.1558150613 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
16 Hb_001633_040 0.1559050272 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
17 Hb_000359_120 0.1589659902 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005725_170 0.1654186357 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
19 Hb_011344_090 0.1660224031 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
20 Hb_000098_130 0.166168988 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]

Gene co-expression network

sample Hb_005839_140 Hb_005839_140 Hb_002157_050 Hb_002157_050 Hb_005839_140--Hb_002157_050 Hb_000317_060 Hb_000317_060 Hb_005839_140--Hb_000317_060 Hb_009620_030 Hb_009620_030 Hb_005839_140--Hb_009620_030 Hb_110482_010 Hb_110482_010 Hb_005839_140--Hb_110482_010 Hb_003529_130 Hb_003529_130 Hb_005839_140--Hb_003529_130 Hb_001953_150 Hb_001953_150 Hb_005839_140--Hb_001953_150 Hb_003780_090 Hb_003780_090 Hb_002157_050--Hb_003780_090 Hb_004096_070 Hb_004096_070 Hb_002157_050--Hb_004096_070 Hb_005333_160 Hb_005333_160 Hb_002157_050--Hb_005333_160 Hb_008568_010 Hb_008568_010 Hb_002157_050--Hb_008568_010 Hb_000359_120 Hb_000359_120 Hb_002157_050--Hb_000359_120 Hb_011689_060 Hb_011689_060 Hb_002157_050--Hb_011689_060 Hb_000317_060--Hb_001953_150 Hb_005054_190 Hb_005054_190 Hb_000317_060--Hb_005054_190 Hb_080147_040 Hb_080147_040 Hb_000317_060--Hb_080147_040 Hb_000922_140 Hb_000922_140 Hb_000317_060--Hb_000922_140 Hb_003430_030 Hb_003430_030 Hb_000317_060--Hb_003430_030 Hb_011918_050 Hb_011918_050 Hb_000317_060--Hb_011918_050 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_000098_130 Hb_000098_130 Hb_110482_010--Hb_000098_130 Hb_000120_620 Hb_000120_620 Hb_110482_010--Hb_000120_620 Hb_000300_360 Hb_000300_360 Hb_110482_010--Hb_000300_360 Hb_002659_060 Hb_002659_060 Hb_110482_010--Hb_002659_060 Hb_000120_610 Hb_000120_610 Hb_110482_010--Hb_000120_610 Hb_004920_130 Hb_004920_130 Hb_110482_010--Hb_004920_130 Hb_000021_020 Hb_000021_020 Hb_003529_130--Hb_000021_020 Hb_003529_130--Hb_000120_620 Hb_003029_130 Hb_003029_130 Hb_003529_130--Hb_003029_130 Hb_003529_130--Hb_080147_040 Hb_011609_170 Hb_011609_170 Hb_003529_130--Hb_011609_170 Hb_001508_020 Hb_001508_020 Hb_003529_130--Hb_001508_020 Hb_001953_150--Hb_000922_140 Hb_005332_020 Hb_005332_020 Hb_001953_150--Hb_005332_020 Hb_001953_150--Hb_080147_040 Hb_001799_050 Hb_001799_050 Hb_001953_150--Hb_001799_050 Hb_001143_250 Hb_001143_250 Hb_001953_150--Hb_001143_250 Hb_000270_460 Hb_000270_460 Hb_001953_150--Hb_000270_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0145 0.675669 0.694523 0.121252 0.536912 1.00947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.361734 0.0710833 0.125629 0.696717 0.278265

CAGE analysis