Hb_005505_040

Information

Type -
Description -
Location Contig5505: 46996-51421
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005505_040 0.0 - - -
2 Hb_009455_020 0.1935645216 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
3 Hb_000340_100 0.201185297 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
4 Hb_000003_710 0.2021330379 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
5 Hb_071188_010 0.2024745985 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
6 Hb_000190_030 0.2047993258 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
7 Hb_167103_010 0.206977671 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
8 Hb_002241_010 0.2101702057 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
9 Hb_001258_030 0.2103227522 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
10 Hb_000819_080 0.2148142797 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_000152_110 0.2203869006 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_179022_010 0.2205230083 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_003038_200 0.222516677 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
14 Hb_155832_010 0.223275072 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_029888_010 0.2270370152 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
16 Hb_070256_010 0.2274874975 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
17 Hb_002311_450 0.2290853221 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
18 Hb_031421_010 0.2297273455 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
19 Hb_000302_180 0.23025844 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000906_100 0.2302731062 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]

Gene co-expression network

sample Hb_005505_040 Hb_005505_040 Hb_009455_020 Hb_009455_020 Hb_005505_040--Hb_009455_020 Hb_000340_100 Hb_000340_100 Hb_005505_040--Hb_000340_100 Hb_000003_710 Hb_000003_710 Hb_005505_040--Hb_000003_710 Hb_071188_010 Hb_071188_010 Hb_005505_040--Hb_071188_010 Hb_000190_030 Hb_000190_030 Hb_005505_040--Hb_000190_030 Hb_167103_010 Hb_167103_010 Hb_005505_040--Hb_167103_010 Hb_007747_210 Hb_007747_210 Hb_009455_020--Hb_007747_210 Hb_009455_020--Hb_000003_710 Hb_009455_020--Hb_000340_100 Hb_000152_110 Hb_000152_110 Hb_009455_020--Hb_000152_110 Hb_004052_170 Hb_004052_170 Hb_009455_020--Hb_004052_170 Hb_002799_070 Hb_002799_070 Hb_009455_020--Hb_002799_070 Hb_000465_190 Hb_000465_190 Hb_000340_100--Hb_000465_190 Hb_000340_100--Hb_000003_710 Hb_003747_230 Hb_003747_230 Hb_000340_100--Hb_003747_230 Hb_001629_080 Hb_001629_080 Hb_000340_100--Hb_001629_080 Hb_005116_050 Hb_005116_050 Hb_000340_100--Hb_005116_050 Hb_002078_340 Hb_002078_340 Hb_000340_100--Hb_002078_340 Hb_000003_710--Hb_000152_110 Hb_002769_030 Hb_002769_030 Hb_000003_710--Hb_002769_030 Hb_002241_010 Hb_002241_010 Hb_000003_710--Hb_002241_010 Hb_000094_070 Hb_000094_070 Hb_000003_710--Hb_000094_070 Hb_000948_150 Hb_000948_150 Hb_000003_710--Hb_000948_150 Hb_002006_030 Hb_002006_030 Hb_000003_710--Hb_002006_030 Hb_003038_200 Hb_003038_200 Hb_071188_010--Hb_003038_200 Hb_000174_170 Hb_000174_170 Hb_071188_010--Hb_000174_170 Hb_000864_030 Hb_000864_030 Hb_071188_010--Hb_000864_030 Hb_071188_010--Hb_000190_030 Hb_002311_450 Hb_002311_450 Hb_071188_010--Hb_002311_450 Hb_000025_690 Hb_000025_690 Hb_071188_010--Hb_000025_690 Hb_000300_180 Hb_000300_180 Hb_000190_030--Hb_000300_180 Hb_000190_030--Hb_003038_200 Hb_003029_070 Hb_003029_070 Hb_000190_030--Hb_003029_070 Hb_000062_370 Hb_000062_370 Hb_000190_030--Hb_000062_370 Hb_000224_160 Hb_000224_160 Hb_000190_030--Hb_000224_160 Hb_000529_180 Hb_000529_180 Hb_167103_010--Hb_000529_180 Hb_000613_120 Hb_000613_120 Hb_167103_010--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_167103_010--Hb_001438_010 Hb_004109_260 Hb_004109_260 Hb_167103_010--Hb_004109_260 Hb_002660_190 Hb_002660_190 Hb_167103_010--Hb_002660_190 Hb_006905_030 Hb_006905_030 Hb_167103_010--Hb_006905_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126516 0.0816114 0.155026 0 0.170223 0.0360072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124725 0.0735932 0.184365 0.146875 0.256616

CAGE analysis