Hb_004920_010

Information

Type -
Description -
Location Contig4920: 11675-13269
Sequence    

Annotation

kegg
ID rcu:RCOM_1347390
description hypothetical protein
nr
ID XP_012082879.1
description PREDICTED: universal stress protein A-like protein [Jatropha curcas]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID A0A067JWC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14017 PE=4 SV=1
Gene Ontology
ID GO:0006950
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45330: 11614-13093
cDNA
(Sanger)
(ID:Location)		 037_H23.ab1: 12026-12983 , 050_C24.ab1: 12239-13090 , 053_F12.ab1: 12045-12933

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_010 0.0 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
2 Hb_001452_220 0.1486585136 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
3 Hb_005725_170 0.1563127944 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
4 Hb_001655_060 0.1624332905 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
5 Hb_002391_370 0.1632808166 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
6 Hb_002374_220 0.1655373999 - - hypothetical protein CICLE_v10001597mg [Citrus clementina]
7 Hb_000384_080 0.1656534982 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
8 Hb_003739_030 0.1748702374 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
9 Hb_006573_170 0.1758549048 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001977_010 0.1760716352 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
11 Hb_000270_300 0.1764473692 - - -
12 Hb_143489_020 0.1815794338 - - -
13 Hb_003388_030 0.1820069493 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
14 Hb_000071_180 0.1834107915 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
15 Hb_004884_020 0.1846515665 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
16 Hb_002909_090 0.1851899435 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
17 Hb_171900_070 0.1870415332 - - -
18 Hb_005333_160 0.188176959 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
19 Hb_143489_010 0.1888205604 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
20 Hb_007456_040 0.1893017644 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]

Gene co-expression network

sample Hb_004920_010 Hb_004920_010 Hb_001452_220 Hb_001452_220 Hb_004920_010--Hb_001452_220 Hb_005725_170 Hb_005725_170 Hb_004920_010--Hb_005725_170 Hb_001655_060 Hb_001655_060 Hb_004920_010--Hb_001655_060 Hb_002391_370 Hb_002391_370 Hb_004920_010--Hb_002391_370 Hb_002374_220 Hb_002374_220 Hb_004920_010--Hb_002374_220 Hb_000384_080 Hb_000384_080 Hb_004920_010--Hb_000384_080 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_001452_220--Hb_002391_370 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_028487_010 Hb_028487_010 Hb_001452_220--Hb_028487_010 Hb_002909_090 Hb_002909_090 Hb_001452_220--Hb_002909_090 Hb_011173_030 Hb_011173_030 Hb_001452_220--Hb_011173_030 Hb_005260_040 Hb_005260_040 Hb_005725_170--Hb_005260_040 Hb_002784_010 Hb_002784_010 Hb_005725_170--Hb_002784_010 Hb_005725_170--Hb_003739_030 Hb_001493_040 Hb_001493_040 Hb_005725_170--Hb_001493_040 Hb_005725_170--Hb_001452_220 Hb_005725_170--Hb_028487_010 Hb_005271_190 Hb_005271_190 Hb_001655_060--Hb_005271_190 Hb_000788_070 Hb_000788_070 Hb_001655_060--Hb_000788_070 Hb_188126_010 Hb_188126_010 Hb_001655_060--Hb_188126_010 Hb_000740_100 Hb_000740_100 Hb_001655_060--Hb_000740_100 Hb_001062_010 Hb_001062_010 Hb_001655_060--Hb_001062_010 Hb_001789_040 Hb_001789_040 Hb_001655_060--Hb_001789_040 Hb_001977_010 Hb_001977_010 Hb_002391_370--Hb_001977_010 Hb_000181_250 Hb_000181_250 Hb_002391_370--Hb_000181_250 Hb_002391_370--Hb_002909_090 Hb_000307_210 Hb_000307_210 Hb_002391_370--Hb_000307_210 Hb_002028_170 Hb_002028_170 Hb_002391_370--Hb_002028_170 Hb_002374_220--Hb_003913_110 Hb_002311_290 Hb_002311_290 Hb_002374_220--Hb_002311_290 Hb_002374_220--Hb_001655_060 Hb_016734_060 Hb_016734_060 Hb_002374_220--Hb_016734_060 Hb_009486_180 Hb_009486_180 Hb_002374_220--Hb_009486_180 Hb_002374_220--Hb_001452_220 Hb_004701_050 Hb_004701_050 Hb_000384_080--Hb_004701_050 Hb_001369_350 Hb_001369_350 Hb_000384_080--Hb_001369_350 Hb_003388_030 Hb_003388_030 Hb_000384_080--Hb_003388_030 Hb_001369_040 Hb_001369_040 Hb_000384_080--Hb_001369_040 Hb_001504_040 Hb_001504_040 Hb_000384_080--Hb_001504_040 Hb_002631_140 Hb_002631_140 Hb_000384_080--Hb_002631_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4315 26.3549 21.088 8.26931 30.5947 58.4661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2434 10.3889 0.760762 50.3723 34.047

CAGE analysis