Hb_004631_010

Information

Type -
Description -
Location Contig4631: 5164-5613
Sequence    

Annotation

kegg
ID rcu:RCOM_0063950
description Early nodulin 20 precursor, putative
nr
ID XP_002533974.1
description Early nodulin 20 precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6V5
description Early nodulin 20, putative OS=Ricinus communis GN=RCOM_0063950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43845: 5095-5941
cDNA
(Sanger)
(ID:Location)		 020_I04.ab1: 5095-5875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_010 0.0 - - Early nodulin 20 precursor, putative [Ricinus communis]
2 Hb_001049_160 0.1715059471 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_001226_170 0.1802468398 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_000087_100 0.1812820276 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
5 Hb_002876_250 0.1850319447 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
6 Hb_000035_420 0.187221337 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
7 Hb_004143_050 0.1997084147 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
8 Hb_014720_050 0.1997657728 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
9 Hb_000245_270 0.1999992598 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
10 Hb_000853_100 0.2006849737 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
11 Hb_007429_020 0.2020471874 - - kinase, putative [Ricinus communis]
12 Hb_002027_170 0.2027159593 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
13 Hb_052113_020 0.2033713806 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
14 Hb_019026_030 0.2051164382 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
15 Hb_001486_200 0.2071363346 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
16 Hb_001619_160 0.207190821 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
17 Hb_013405_100 0.2087641904 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
18 Hb_000776_050 0.2097806305 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
19 Hb_007382_100 0.2117341784 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_000359_080 0.212308967 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_004631_010 Hb_004631_010 Hb_001049_160 Hb_001049_160 Hb_004631_010--Hb_001049_160 Hb_001226_170 Hb_001226_170 Hb_004631_010--Hb_001226_170 Hb_000087_100 Hb_000087_100 Hb_004631_010--Hb_000087_100 Hb_002876_250 Hb_002876_250 Hb_004631_010--Hb_002876_250 Hb_000035_420 Hb_000035_420 Hb_004631_010--Hb_000035_420 Hb_004143_050 Hb_004143_050 Hb_004631_010--Hb_004143_050 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_007382_100 Hb_007382_100 Hb_001049_160--Hb_007382_100 Hb_001049_160--Hb_002876_250 Hb_001486_200 Hb_001486_200 Hb_001049_160--Hb_001486_200 Hb_001318_140 Hb_001318_140 Hb_001049_160--Hb_001318_140 Hb_001226_170--Hb_000087_100 Hb_003633_150 Hb_003633_150 Hb_001226_170--Hb_003633_150 Hb_009476_110 Hb_009476_110 Hb_001226_170--Hb_009476_110 Hb_001102_200 Hb_001102_200 Hb_001226_170--Hb_001102_200 Hb_001226_170--Hb_007382_100 Hb_182970_010 Hb_182970_010 Hb_001226_170--Hb_182970_010 Hb_000087_100--Hb_001318_140 Hb_002849_110 Hb_002849_110 Hb_000087_100--Hb_002849_110 Hb_000087_100--Hb_007382_100 Hb_000836_210 Hb_000836_210 Hb_000087_100--Hb_000836_210 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_000116_210 Hb_000116_210 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_000245_270 Hb_000245_270 Hb_000035_420--Hb_000245_270 Hb_000035_420--Hb_004143_050 Hb_000506_130 Hb_000506_130 Hb_000035_420--Hb_000506_130 Hb_000172_080 Hb_000172_080 Hb_000035_420--Hb_000172_080 Hb_166155_010 Hb_166155_010 Hb_000035_420--Hb_166155_010 Hb_034953_010 Hb_034953_010 Hb_000035_420--Hb_034953_010 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_004143_050--Hb_000245_270 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_004143_050--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_004143_050--Hb_029238_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.868639 59.1516 7.63775 28.8862 0.128396 0.15238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37083 3.02597 10.0104 9.54428 8.0385

CAGE analysis