Hb_004619_060

Information

Type -
Description -
Location Contig4619: 52351-57179
Sequence    

Annotation

kegg
ID sot:102579862
description uncharacterized LOC102579862
nr
ID XP_010274311.1
description PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
swissprot
ID P0CB26
description Uncharacterized protein At1g10890 OS=Arabidopsis thaliana GN=At1g10890 PE=4 SV=1
trembl
ID K7L7I2
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43756: 53757-56101 , PASA_asmbl_43757: 56109-57900 , PASA_asmbl_43758: 52384-56101 , PASA_asmbl_43760: 53191-57900
cDNA
(Sanger)
(ID:Location)		 031_L20.ab1: 56175-56977

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004619_060 0.0 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
2 Hb_004994_120 0.0667806391 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
3 Hb_007283_010 0.0737537258 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
4 Hb_000085_210 0.0761134994 - - DNA topoisomerase type I, putative [Ricinus communis]
5 Hb_055235_020 0.0813551788 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
6 Hb_007044_110 0.0813610437 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_003093_040 0.0838595114 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
8 Hb_005288_070 0.085230533 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_004976_010 0.0897904714 - - hypothetical protein RCOM_1429110 [Ricinus communis]
10 Hb_000661_120 0.0907448238 - - cap binding protein, putative [Ricinus communis]
11 Hb_000003_400 0.0909520952 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_004324_330 0.0913850142 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
13 Hb_033642_120 0.0932751994 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
14 Hb_000795_040 0.0939455608 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
15 Hb_000175_410 0.0955223149 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
16 Hb_011972_020 0.0965252511 - - protein binding protein, putative [Ricinus communis]
17 Hb_057688_010 0.0968808984 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
18 Hb_000710_040 0.0984390705 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
19 Hb_000111_170 0.0998544373 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
20 Hb_000205_260 0.0999427062 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]

Gene co-expression network

sample Hb_004619_060 Hb_004619_060 Hb_004994_120 Hb_004994_120 Hb_004619_060--Hb_004994_120 Hb_007283_010 Hb_007283_010 Hb_004619_060--Hb_007283_010 Hb_000085_210 Hb_000085_210 Hb_004619_060--Hb_000085_210 Hb_055235_020 Hb_055235_020 Hb_004619_060--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_004619_060--Hb_007044_110 Hb_003093_040 Hb_003093_040 Hb_004619_060--Hb_003093_040 Hb_004994_120--Hb_007283_010 Hb_005288_070 Hb_005288_070 Hb_004994_120--Hb_005288_070 Hb_004994_120--Hb_000085_210 Hb_001623_270 Hb_001623_270 Hb_004994_120--Hb_001623_270 Hb_030414_040 Hb_030414_040 Hb_004994_120--Hb_030414_040 Hb_007283_010--Hb_005288_070 Hb_000457_230 Hb_000457_230 Hb_007283_010--Hb_000457_230 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_000205_260 Hb_000205_260 Hb_007283_010--Hb_000205_260 Hb_000795_040 Hb_000795_040 Hb_000085_210--Hb_000795_040 Hb_000111_170 Hb_000111_170 Hb_000085_210--Hb_000111_170 Hb_000085_210--Hb_005288_070 Hb_000676_330 Hb_000676_330 Hb_000085_210--Hb_000676_330 Hb_017469_110 Hb_017469_110 Hb_000085_210--Hb_017469_110 Hb_001439_220 Hb_001439_220 Hb_000085_210--Hb_001439_220 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_055235_020--Hb_000457_230 Hb_007044_110--Hb_000205_260 Hb_007044_110--Hb_000457_230 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_007044_110--Hb_004976_010 Hb_000011_270 Hb_000011_270 Hb_003093_040--Hb_000011_270 Hb_000175_410 Hb_000175_410 Hb_003093_040--Hb_000175_410 Hb_001221_180 Hb_001221_180 Hb_003093_040--Hb_001221_180 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_002374_230 Hb_002374_230 Hb_003093_040--Hb_002374_230 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2738 24.0128 27.1105 14.3813 18.7843 11.1037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4151 14.1836 4.25701 19.1735 25.0733

CAGE analysis