Hb_004520_030

Information

Type -
Description -
Location Contig4520: 15842-20467
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004520_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000463_030 0.2755819842 - - -
3 Hb_100684_010 0.2883693998 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_001488_260 0.298387077 - - Alpha-2-macroglobulin [Gossypium arboreum]
5 Hb_017604_030 0.3024547848 - - -
6 Hb_008305_010 0.3034916226 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000752_080 0.3052602615 - - -
8 Hb_012184_030 0.3083964274 - - -
9 Hb_004241_030 0.3087565456 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004459_070 0.3262442765 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
11 Hb_001158_010 0.3271433243 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_000627_020 0.328943879 - - hypothetical protein MIMGU_mgv1a021461mg, partial [Erythranthe guttata]
13 Hb_003038_150 0.3299533774 - - -
14 Hb_001461_020 0.3315274425 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
15 Hb_023675_030 0.334193019 - - -
16 Hb_001878_030 0.3384715051 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
17 Hb_105581_010 0.3395380515 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_002888_020 0.3414284689 - - -
19 Hb_004010_020 0.3429367352 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_000427_080 0.3540183608 - - PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]

Gene co-expression network

sample Hb_004520_030 Hb_004520_030 Hb_000463_030 Hb_000463_030 Hb_004520_030--Hb_000463_030 Hb_100684_010 Hb_100684_010 Hb_004520_030--Hb_100684_010 Hb_001488_260 Hb_001488_260 Hb_004520_030--Hb_001488_260 Hb_017604_030 Hb_017604_030 Hb_004520_030--Hb_017604_030 Hb_008305_010 Hb_008305_010 Hb_004520_030--Hb_008305_010 Hb_000752_080 Hb_000752_080 Hb_004520_030--Hb_000752_080 Hb_105581_010 Hb_105581_010 Hb_000463_030--Hb_105581_010 Hb_000463_030--Hb_001488_260 Hb_001417_020 Hb_001417_020 Hb_000463_030--Hb_001417_020 Hb_008123_010 Hb_008123_010 Hb_000463_030--Hb_008123_010 Hb_154141_010 Hb_154141_010 Hb_000463_030--Hb_154141_010 Hb_004687_010 Hb_004687_010 Hb_000463_030--Hb_004687_010 Hb_001878_030 Hb_001878_030 Hb_100684_010--Hb_001878_030 Hb_002536_020 Hb_002536_020 Hb_100684_010--Hb_002536_020 Hb_007749_030 Hb_007749_030 Hb_100684_010--Hb_007749_030 Hb_003155_060 Hb_003155_060 Hb_100684_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_100684_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_100684_010--Hb_108768_010 Hb_000703_300 Hb_000703_300 Hb_001488_260--Hb_000703_300 Hb_007313_060 Hb_007313_060 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_004459_070 Hb_004459_070 Hb_001488_260--Hb_004459_070 Hb_003038_150 Hb_003038_150 Hb_001488_260--Hb_003038_150 Hb_017604_030--Hb_000752_080 Hb_031866_030 Hb_031866_030 Hb_017604_030--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_017604_030--Hb_002060_040 Hb_009152_030 Hb_009152_030 Hb_017604_030--Hb_009152_030 Hb_033066_030 Hb_033066_030 Hb_017604_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_017604_030--Hb_000009_010 Hb_000011_470 Hb_000011_470 Hb_008305_010--Hb_000011_470 Hb_013420_040 Hb_013420_040 Hb_008305_010--Hb_013420_040 Hb_121041_010 Hb_121041_010 Hb_008305_010--Hb_121041_010 Hb_000627_020 Hb_000627_020 Hb_008305_010--Hb_000627_020 Hb_158203_010 Hb_158203_010 Hb_008305_010--Hb_158203_010 Hb_183191_020 Hb_183191_020 Hb_008305_010--Hb_183191_020 Hb_007040_010 Hb_007040_010 Hb_000752_080--Hb_007040_010 Hb_012184_030 Hb_012184_030 Hb_000752_080--Hb_012184_030 Hb_185839_010 Hb_185839_010 Hb_000752_080--Hb_185839_010 Hb_004010_020 Hb_004010_020 Hb_000752_080--Hb_004010_020 Hb_008758_010 Hb_008758_010 Hb_000752_080--Hb_008758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010375 0.00381415 0 0 0.00868404 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0105114 0 0 0.00655202 0.0532012

CAGE analysis