Hb_001878_030

Information

Type -
Description -
Location Contig1878: 60249-65273
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_011025080.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001878_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
2 Hb_100684_010 0.1908332954 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_001322_090 0.2543420254 - - PREDICTED: uncharacterized protein LOC104607608 [Nelumbo nucifera]
4 Hb_001629_040 0.2753431135 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
5 Hb_128193_010 0.2760521525 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
6 Hb_017687_010 0.2795277784 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
7 Hb_000009_010 0.2809228653 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
8 Hb_031866_030 0.3200989031 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
9 Hb_009152_030 0.3252874689 - - hypothetical protein L484_026849 [Morus notabilis]
10 Hb_002060_040 0.32566336 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_033066_030 0.325976237 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
12 Hb_001623_600 0.3300326379 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
13 Hb_004520_030 0.3384715051 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_023142_010 0.3407009861 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
15 Hb_009557_010 0.3425157624 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_108768_010 0.3456708597 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_000576_100 0.345849412 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_003155_060 0.3458648209 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
19 Hb_023161_030 0.3460998617 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_010164_040 0.3492774271 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_001878_030 Hb_001878_030 Hb_100684_010 Hb_100684_010 Hb_001878_030--Hb_100684_010 Hb_001322_090 Hb_001322_090 Hb_001878_030--Hb_001322_090 Hb_001629_040 Hb_001629_040 Hb_001878_030--Hb_001629_040 Hb_128193_010 Hb_128193_010 Hb_001878_030--Hb_128193_010 Hb_017687_010 Hb_017687_010 Hb_001878_030--Hb_017687_010 Hb_000009_010 Hb_000009_010 Hb_001878_030--Hb_000009_010 Hb_002536_020 Hb_002536_020 Hb_100684_010--Hb_002536_020 Hb_007749_030 Hb_007749_030 Hb_100684_010--Hb_007749_030 Hb_003155_060 Hb_003155_060 Hb_100684_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_100684_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_100684_010--Hb_108768_010 Hb_009557_010 Hb_009557_010 Hb_001322_090--Hb_009557_010 Hb_054343_010 Hb_054343_010 Hb_001322_090--Hb_054343_010 Hb_171900_010 Hb_171900_010 Hb_001322_090--Hb_171900_010 Hb_001322_090--Hb_128193_010 Hb_027892_070 Hb_027892_070 Hb_001322_090--Hb_027892_070 Hb_001629_040--Hb_000009_010 Hb_001629_040--Hb_128193_010 Hb_031866_030 Hb_031866_030 Hb_001629_040--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_001629_040--Hb_009152_030 Hb_002060_040 Hb_002060_040 Hb_001629_040--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_001629_040--Hb_033066_030 Hb_128193_010--Hb_000009_010 Hb_128193_010--Hb_009557_010 Hb_023142_010 Hb_023142_010 Hb_128193_010--Hb_023142_010 Hb_128193_010--Hb_031866_030 Hb_128193_010--Hb_009152_030 Hb_017687_010--Hb_108768_010 Hb_017687_010--Hb_000576_100 Hb_017687_010--Hb_003155_060 Hb_023161_030 Hb_023161_030 Hb_017687_010--Hb_023161_030 Hb_017687_010--Hb_007749_030 Hb_017687_010--Hb_002536_020 Hb_000009_010--Hb_031866_030 Hb_000009_010--Hb_002060_040 Hb_000009_010--Hb_033066_030 Hb_000009_010--Hb_009152_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117282 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.013293 0 0 0.0248828 0.0447028

CAGE analysis