Hb_001322_090

Information

Type -
Description -
Location Contig1322: 82661-83096
Sequence    

Annotation

kegg
ID pmum:103329134
description uncharacterized LOC103329134
nr
ID XP_010271575.1
description PREDICTED: uncharacterized protein LOC104607608 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A068V3X3
description Coffea canephora DH200=94 genomic scaffold, scaffold_98 OS=Coffea canephora GN=GSCOC_T00043070001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_090 0.0 - - PREDICTED: uncharacterized protein LOC104607608 [Nelumbo nucifera]
2 Hb_001878_030 0.2543420254 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
3 Hb_009557_010 0.3261520817 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_054343_010 0.3359381473 - - PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
5 Hb_171900_010 0.3686554538 - - conserved hypothetical protein [Ricinus communis]
6 Hb_128193_010 0.3857243412 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
7 Hb_027892_070 0.3886332256 - - conserved hypothetical protein [Ricinus communis]
8 Hb_017687_010 0.3921885543 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
9 Hb_000046_340 0.397016781 - - -
10 Hb_049717_010 0.4111467081 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
11 Hb_023142_010 0.4127529985 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
12 Hb_023161_030 0.4155278805 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_002233_040 0.4194179601 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
14 Hb_060411_010 0.4209562529 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
15 Hb_121348_010 0.4212902106 - - -
16 Hb_001629_040 0.4227517111 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
17 Hb_138607_010 0.4255371873 - - hypothetical protein RCOM_0725500 [Ricinus communis]
18 Hb_004143_120 0.4267118438 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
19 Hb_001123_020 0.4274276569 - - PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Jatropha curcas]
20 Hb_000516_060 0.4286485126 - - polyphenol oxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001322_090 Hb_001322_090 Hb_001878_030 Hb_001878_030 Hb_001322_090--Hb_001878_030 Hb_009557_010 Hb_009557_010 Hb_001322_090--Hb_009557_010 Hb_054343_010 Hb_054343_010 Hb_001322_090--Hb_054343_010 Hb_171900_010 Hb_171900_010 Hb_001322_090--Hb_171900_010 Hb_128193_010 Hb_128193_010 Hb_001322_090--Hb_128193_010 Hb_027892_070 Hb_027892_070 Hb_001322_090--Hb_027892_070 Hb_100684_010 Hb_100684_010 Hb_001878_030--Hb_100684_010 Hb_001629_040 Hb_001629_040 Hb_001878_030--Hb_001629_040 Hb_001878_030--Hb_128193_010 Hb_017687_010 Hb_017687_010 Hb_001878_030--Hb_017687_010 Hb_000009_010 Hb_000009_010 Hb_001878_030--Hb_000009_010 Hb_009557_010--Hb_054343_010 Hb_009557_010--Hb_128193_010 Hb_009557_010--Hb_171900_010 Hb_023142_010 Hb_023142_010 Hb_009557_010--Hb_023142_010 Hb_009557_010--Hb_001629_040 Hb_009557_010--Hb_000009_010 Hb_054343_010--Hb_171900_010 Hb_138607_010 Hb_138607_010 Hb_054343_010--Hb_138607_010 Hb_054343_010--Hb_023142_010 Hb_054343_010--Hb_128193_010 Hb_000159_030 Hb_000159_030 Hb_054343_010--Hb_000159_030 Hb_000967_030 Hb_000967_030 Hb_171900_010--Hb_000967_030 Hb_171900_010--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_171900_010--Hb_159957_020 Hb_019299_050 Hb_019299_050 Hb_171900_010--Hb_019299_050 Hb_128193_010--Hb_001629_040 Hb_128193_010--Hb_000009_010 Hb_128193_010--Hb_023142_010 Hb_031866_030 Hb_031866_030 Hb_128193_010--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_128193_010--Hb_009152_030 Hb_001538_170 Hb_001538_170 Hb_027892_070--Hb_001538_170 Hb_002762_090 Hb_002762_090 Hb_027892_070--Hb_002762_090 Hb_001104_090 Hb_001104_090 Hb_027892_070--Hb_001104_090 Hb_004143_120 Hb_004143_120 Hb_027892_070--Hb_004143_120 Hb_000056_220 Hb_000056_220 Hb_027892_070--Hb_000056_220 Hb_008226_020 Hb_008226_020 Hb_027892_070--Hb_008226_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.772639 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817033 0 0 1.84026 0.83025

CAGE analysis