Hb_003992_200

Information

Type -
Description -
Location Contig3992: 124737-133183
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_200 0.0 - - -
2 Hb_001902_170 0.2520593719 - - PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Nicotiana sylvestris]
3 Hb_098068_010 0.2559070638 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
4 Hb_000518_040 0.2619706884 - - -
5 Hb_005401_010 0.2704227652 - - -
6 Hb_003527_020 0.2731553511 - - BnaC01g27150D [Brassica napus]
7 Hb_042463_050 0.2907214653 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000959_050 0.2907973923 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
9 Hb_000636_010 0.2910454363 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
10 Hb_117001_010 0.2937633884 - - -
11 Hb_061940_010 0.2950037008 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
12 Hb_024468_040 0.2951609902 - - -
13 Hb_104735_020 0.2981539346 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
14 Hb_007193_050 0.3025518625 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_001300_090 0.30499564 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
16 Hb_144027_010 0.3055598438 - - -
17 Hb_000224_250 0.3060318371 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
18 Hb_002030_050 0.3079172733 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
19 Hb_011288_010 0.3095753317 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_005656_150 0.3098894858 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]

Gene co-expression network

sample Hb_003992_200 Hb_003992_200 Hb_001902_170 Hb_001902_170 Hb_003992_200--Hb_001902_170 Hb_098068_010 Hb_098068_010 Hb_003992_200--Hb_098068_010 Hb_000518_040 Hb_000518_040 Hb_003992_200--Hb_000518_040 Hb_005401_010 Hb_005401_010 Hb_003992_200--Hb_005401_010 Hb_003527_020 Hb_003527_020 Hb_003992_200--Hb_003527_020 Hb_042463_050 Hb_042463_050 Hb_003992_200--Hb_042463_050 Hb_161017_020 Hb_161017_020 Hb_001902_170--Hb_161017_020 Hb_001902_170--Hb_098068_010 Hb_185274_020 Hb_185274_020 Hb_001902_170--Hb_185274_020 Hb_001338_150 Hb_001338_150 Hb_001902_170--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_001902_170--Hb_003032_090 Hb_001338_090 Hb_001338_090 Hb_001902_170--Hb_001338_090 Hb_104735_020 Hb_104735_020 Hb_098068_010--Hb_104735_020 Hb_001300_090 Hb_001300_090 Hb_098068_010--Hb_001300_090 Hb_003540_070 Hb_003540_070 Hb_098068_010--Hb_003540_070 Hb_000012_440 Hb_000012_440 Hb_098068_010--Hb_000012_440 Hb_101733_010 Hb_101733_010 Hb_098068_010--Hb_101733_010 Hb_000518_040--Hb_104735_020 Hb_117001_010 Hb_117001_010 Hb_000518_040--Hb_117001_010 Hb_144027_010 Hb_144027_010 Hb_000518_040--Hb_144027_010 Hb_006405_040 Hb_006405_040 Hb_000518_040--Hb_006405_040 Hb_062273_010 Hb_062273_010 Hb_000518_040--Hb_062273_010 Hb_072212_020 Hb_072212_020 Hb_000518_040--Hb_072212_020 Hb_006043_030 Hb_006043_030 Hb_005401_010--Hb_006043_030 Hb_001769_130 Hb_001769_130 Hb_005401_010--Hb_001769_130 Hb_005401_010--Hb_117001_010 Hb_005401_010--Hb_003527_020 Hb_000671_140 Hb_000671_140 Hb_005401_010--Hb_000671_140 Hb_005401_010--Hb_042463_050 Hb_000959_050 Hb_000959_050 Hb_003527_020--Hb_000959_050 Hb_000060_130 Hb_000060_130 Hb_003527_020--Hb_000060_130 Hb_003527_020--Hb_006043_030 Hb_062503_010 Hb_062503_010 Hb_003527_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_003527_020--Hb_005183_060 Hb_045785_010 Hb_045785_010 Hb_003527_020--Hb_045785_010 Hb_004884_210 Hb_004884_210 Hb_042463_050--Hb_004884_210 Hb_024468_040 Hb_024468_040 Hb_042463_050--Hb_024468_040 Hb_172426_010 Hb_172426_010 Hb_042463_050--Hb_172426_010 Hb_004372_050 Hb_004372_050 Hb_042463_050--Hb_004372_050 Hb_001999_050 Hb_001999_050 Hb_042463_050--Hb_001999_050 Hb_002030_050 Hb_002030_050 Hb_042463_050--Hb_002030_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.129417 0.0205113 0 0.0776957 0.0227729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.3775

CAGE analysis