Hb_003274_030

Information

Type -
Description -
Location Contig3274: 40423-44630
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18490g
description POPTRDRAFT_854085; putative wall-associated kinase family protein
nr
ID XP_002304841.2
description putative wall-associated kinase family protein [Populus trichocarpa]
swissprot
ID Q9SA25
description Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1
trembl
ID B9GXW0
description Putative wall-associated kinase family protein OS=Populus trichocarpa GN=POPTR_0003s18490g PE=4 SV=2
Gene Ontology
ID GO:0016021
description wall-associated receptor kinase-like 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003274_030 0.0 - - putative wall-associated kinase family protein [Populus trichocarpa]
2 Hb_003417_030 0.2036863362 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
3 Hb_002482_030 0.2120283798 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
4 Hb_003725_010 0.2142377211 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
5 Hb_003216_060 0.2173129949 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
6 Hb_004208_140 0.2216794644 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
7 Hb_012799_150 0.2253889473 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
8 Hb_001584_380 0.2275121881 - - PREDICTED: tropomyosin-like [Jatropha curcas]
9 Hb_005288_050 0.2275414245 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
10 Hb_000015_090 0.2277822531 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
11 Hb_121089_020 0.2288850061 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
12 Hb_001054_070 0.2289690703 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
13 Hb_017914_010 0.2298881236 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
14 Hb_000318_480 0.2303395817 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
15 Hb_001159_020 0.2338255705 - - -
16 Hb_004659_010 0.2351657059 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
17 Hb_002766_050 0.2355242079 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
18 Hb_110567_010 0.2363165887 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
19 Hb_024714_070 0.2364486046 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
20 Hb_000260_160 0.2370751612 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003274_030 Hb_003274_030 Hb_003417_030 Hb_003417_030 Hb_003274_030--Hb_003417_030 Hb_002482_030 Hb_002482_030 Hb_003274_030--Hb_002482_030 Hb_003725_010 Hb_003725_010 Hb_003274_030--Hb_003725_010 Hb_003216_060 Hb_003216_060 Hb_003274_030--Hb_003216_060 Hb_004208_140 Hb_004208_140 Hb_003274_030--Hb_004208_140 Hb_012799_150 Hb_012799_150 Hb_003274_030--Hb_012799_150 Hb_017914_010 Hb_017914_010 Hb_003417_030--Hb_017914_010 Hb_024714_070 Hb_024714_070 Hb_003417_030--Hb_024714_070 Hb_003417_030--Hb_003725_010 Hb_003417_030--Hb_012799_150 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_002804_010 Hb_002804_010 Hb_002482_030--Hb_002804_010 Hb_005183_140 Hb_005183_140 Hb_002482_030--Hb_005183_140 Hb_002249_050 Hb_002249_050 Hb_002482_030--Hb_002249_050 Hb_002387_040 Hb_002387_040 Hb_002482_030--Hb_002387_040 Hb_002154_020 Hb_002154_020 Hb_002482_030--Hb_002154_020 Hb_002400_160 Hb_002400_160 Hb_002482_030--Hb_002400_160 Hb_013358_060 Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_003725_010--Hb_000270_700 Hb_003725_010--Hb_024714_070 Hb_003725_010--Hb_012799_150 Hb_000015_090 Hb_000015_090 Hb_003725_010--Hb_000015_090 Hb_003725_010--Hb_017914_010 Hb_002686_410 Hb_002686_410 Hb_003216_060--Hb_002686_410 Hb_001488_210 Hb_001488_210 Hb_003216_060--Hb_001488_210 Hb_010775_010 Hb_010775_010 Hb_003216_060--Hb_010775_010 Hb_000260_760 Hb_000260_760 Hb_003216_060--Hb_000260_760 Hb_006794_020 Hb_006794_020 Hb_003216_060--Hb_006794_020 Hb_003216_060--Hb_013358_060 Hb_002900_120 Hb_002900_120 Hb_004208_140--Hb_002900_120 Hb_004774_020 Hb_004774_020 Hb_004208_140--Hb_004774_020 Hb_004208_140--Hb_002387_040 Hb_002042_170 Hb_002042_170 Hb_004208_140--Hb_002042_170 Hb_000156_090 Hb_000156_090 Hb_004208_140--Hb_000156_090 Hb_002766_050 Hb_002766_050 Hb_004208_140--Hb_002766_050 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_104920_010 Hb_104920_010 Hb_012799_150--Hb_104920_010 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_025787_010 Hb_025787_010 Hb_012799_150--Hb_025787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116056 0.113415 0.0414286 0.0269178 0.0268678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0669816 0.0317986 0.066588 0.0708855

CAGE analysis