Hb_002232_420

Information

Type -
Description -
Location Contig2232: 339006-345220
Sequence    

Annotation

kegg
ID rcu:RCOM_0816850
description Palmitoyltransferase TIP1, putative (EC:1.3.1.74)
nr
ID XP_002518303.1
description Palmitoyltransferase TIP1, putative [Ricinus communis]
swissprot
ID Q3EC11
description Probable protein S-acyltransferase 23 OS=Arabidopsis thaliana GN=PAT23 PE=2 SV=2
trembl
ID B9RX34
description S-acyltransferase OS=Ricinus communis GN=RCOM_0816850 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable protein s-acyltransferase 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23139: 339021-339785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_420 0.0 - - Palmitoyltransferase TIP1, putative [Ricinus communis]
2 Hb_003693_020 0.1999011114 - - Ycf1, partial (chloroplast) [Clusia rosea]
3 Hb_004010_080 0.2208070733 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_073490_010 0.2279447129 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
5 Hb_019253_040 0.2318741833 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012753_070 0.2344920844 - - hypothetical protein VITISV_033646 [Vitis vinifera]
7 Hb_002630_030 0.2360017185 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
8 Hb_161017_020 0.238914597 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
9 Hb_011716_120 0.2395338247 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
10 Hb_001691_130 0.2408275605 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
11 Hb_001338_150 0.2409272689 - - hypothetical chloroplast RF1 [Dillenia indica]
12 Hb_001645_020 0.2409568802 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
13 Hb_002200_100 0.2421459066 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
14 Hb_004811_010 0.2435297844 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
15 Hb_010710_100 0.2459659581 - - kinase, putative [Ricinus communis]
16 Hb_004542_030 0.2460093289 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
17 Hb_003693_060 0.2464046456 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
18 Hb_000367_150 0.2468351193 - - -
19 Hb_105785_010 0.2485695697 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_000668_210 0.2490819354 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_002232_420 Hb_002232_420 Hb_003693_020 Hb_003693_020 Hb_002232_420--Hb_003693_020 Hb_004010_080 Hb_004010_080 Hb_002232_420--Hb_004010_080 Hb_073490_010 Hb_073490_010 Hb_002232_420--Hb_073490_010 Hb_019253_040 Hb_019253_040 Hb_002232_420--Hb_019253_040 Hb_012753_070 Hb_012753_070 Hb_002232_420--Hb_012753_070 Hb_002630_030 Hb_002630_030 Hb_002232_420--Hb_002630_030 Hb_000156_240 Hb_000156_240 Hb_003693_020--Hb_000156_240 Hb_031194_010 Hb_031194_010 Hb_003693_020--Hb_031194_010 Hb_002027_420 Hb_002027_420 Hb_003693_020--Hb_002027_420 Hb_003963_040 Hb_003963_040 Hb_003693_020--Hb_003963_040 Hb_003693_020--Hb_019253_040 Hb_004542_030 Hb_004542_030 Hb_003693_020--Hb_004542_030 Hb_000858_050 Hb_000858_050 Hb_004010_080--Hb_000858_050 Hb_001001_130 Hb_001001_130 Hb_004010_080--Hb_001001_130 Hb_000270_040 Hb_000270_040 Hb_004010_080--Hb_000270_040 Hb_000282_100 Hb_000282_100 Hb_004010_080--Hb_000282_100 Hb_015807_020 Hb_015807_020 Hb_004010_080--Hb_015807_020 Hb_005029_030 Hb_005029_030 Hb_004010_080--Hb_005029_030 Hb_159305_010 Hb_159305_010 Hb_073490_010--Hb_159305_010 Hb_073490_010--Hb_003693_020 Hb_006925_030 Hb_006925_030 Hb_073490_010--Hb_006925_030 Hb_073490_010--Hb_019253_040 Hb_003336_020 Hb_003336_020 Hb_073490_010--Hb_003336_020 Hb_073490_010--Hb_000156_240 Hb_007645_060 Hb_007645_060 Hb_019253_040--Hb_007645_060 Hb_182972_020 Hb_182972_020 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_051924_010 Hb_051924_010 Hb_019253_040--Hb_051924_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_001338_080 Hb_001338_080 Hb_019253_040--Hb_001338_080 Hb_000031_200 Hb_000031_200 Hb_012753_070--Hb_000031_200 Hb_008918_030 Hb_008918_030 Hb_012753_070--Hb_008918_030 Hb_000668_210 Hb_000668_210 Hb_012753_070--Hb_000668_210 Hb_002200_100 Hb_002200_100 Hb_012753_070--Hb_002200_100 Hb_001244_030 Hb_001244_030 Hb_012753_070--Hb_001244_030 Hb_000920_020 Hb_000920_020 Hb_012753_070--Hb_000920_020 Hb_001691_130 Hb_001691_130 Hb_002630_030--Hb_001691_130 Hb_004968_090 Hb_004968_090 Hb_002630_030--Hb_004968_090 Hb_005666_030 Hb_005666_030 Hb_002630_030--Hb_005666_030 Hb_005551_030 Hb_005551_030 Hb_002630_030--Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_002630_030--Hb_001231_020 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0782691 0 0.0300851 0.0131717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0269233 0 0.021518 0.505164

CAGE analysis