Hb_012753_070

Information

Type -
Description -
Location Contig12753: 32679-35808
Sequence    

Annotation

kegg
ID cmo:103489421
description uncharacterized LOC103489421
nr
ID CAN70361.1
description hypothetical protein VITISV_033646 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BN86
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033646 PE=4 SV=1
Gene Ontology
ID GO:0097159
description hypothetical protein VITISV_033646

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_070 0.0 - - hypothetical protein VITISV_033646 [Vitis vinifera]
2 Hb_000031_200 0.1884642384 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
3 Hb_008918_030 0.211121593 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_000668_210 0.212878273 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
5 Hb_002200_100 0.2171088998 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
6 Hb_001244_030 0.2249276874 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000920_020 0.2287787645 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
8 Hb_029238_030 0.2315597836 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
9 Hb_019253_040 0.2318491506 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007908_010 0.2344316283 - - -
11 Hb_002232_420 0.2344920844 - - Palmitoyltransferase TIP1, putative [Ricinus communis]
12 Hb_088080_030 0.2364614509 - - ribosomal protein S4 [Hevea brasiliensis]
13 Hb_028527_010 0.2374102085 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
14 Hb_007083_040 0.2410517738 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
15 Hb_007970_040 0.2424904568 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
16 Hb_002249_200 0.246416459 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
17 Hb_130507_020 0.247072371 - - -
18 Hb_000879_260 0.2472631032 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
19 Hb_000060_070 0.2488165224 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
20 Hb_000699_080 0.249459587 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012753_070 Hb_012753_070 Hb_000031_200 Hb_000031_200 Hb_012753_070--Hb_000031_200 Hb_008918_030 Hb_008918_030 Hb_012753_070--Hb_008918_030 Hb_000668_210 Hb_000668_210 Hb_012753_070--Hb_000668_210 Hb_002200_100 Hb_002200_100 Hb_012753_070--Hb_002200_100 Hb_001244_030 Hb_001244_030 Hb_012753_070--Hb_001244_030 Hb_000920_020 Hb_000920_020 Hb_012753_070--Hb_000920_020 Hb_000031_200--Hb_008918_030 Hb_000879_260 Hb_000879_260 Hb_000031_200--Hb_000879_260 Hb_007575_010 Hb_007575_010 Hb_000031_200--Hb_007575_010 Hb_144838_010 Hb_144838_010 Hb_000031_200--Hb_144838_010 Hb_000373_140 Hb_000373_140 Hb_000031_200--Hb_000373_140 Hb_001508_010 Hb_001508_010 Hb_000031_200--Hb_001508_010 Hb_008918_030--Hb_000879_260 Hb_004375_020 Hb_004375_020 Hb_008918_030--Hb_004375_020 Hb_042463_030 Hb_042463_030 Hb_008918_030--Hb_042463_030 Hb_008918_030--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_008918_030--Hb_004987_040 Hb_130507_020 Hb_130507_020 Hb_000668_210--Hb_130507_020 Hb_000668_210--Hb_002200_100 Hb_000668_210--Hb_001244_030 Hb_002249_200 Hb_002249_200 Hb_000668_210--Hb_002249_200 Hb_007908_010 Hb_007908_010 Hb_000668_210--Hb_007908_010 Hb_025528_010 Hb_025528_010 Hb_000668_210--Hb_025528_010 Hb_154430_010 Hb_154430_010 Hb_002200_100--Hb_154430_010 Hb_003746_020 Hb_003746_020 Hb_002200_100--Hb_003746_020 Hb_004010_080 Hb_004010_080 Hb_002200_100--Hb_004010_080 Hb_006111_040 Hb_006111_040 Hb_002200_100--Hb_006111_040 Hb_002200_100--Hb_130507_020 Hb_028527_010 Hb_028527_010 Hb_001244_030--Hb_028527_010 Hb_001244_030--Hb_002249_200 Hb_001244_030--Hb_025528_010 Hb_005542_170 Hb_005542_170 Hb_001244_030--Hb_005542_170 Hb_033095_050 Hb_033095_050 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020 Hb_034168_010 Hb_034168_010 Hb_000920_020--Hb_034168_010 Hb_042463_070 Hb_042463_070 Hb_000920_020--Hb_042463_070 Hb_088080_030 Hb_088080_030 Hb_000920_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_000920_020--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0342093 0.0399914 0.0196195 0.0371197 0.0128249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.161919 0 0.0461334 1.16389

CAGE analysis