Hb_002175_020

Information

Type -
Description -
Location Contig2175: 24912-25824
Sequence    

Annotation

kegg
ID rcu:RCOM_0820440
description hypothetical protein
nr
ID XP_012082215.1
description PREDICTED: uncharacterized protein LOC105642125 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16416 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002175_020 0.0 - - PREDICTED: uncharacterized protein LOC105642125 isoform X2 [Jatropha curcas]
2 Hb_002194_050 0.1611459444 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
3 Hb_004129_090 0.1771479913 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
4 Hb_007451_040 0.17833763 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
5 Hb_000260_430 0.1792993079 - - ribosomal protein L17, putative [Ricinus communis]
6 Hb_007263_010 0.1852337391 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_000808_110 0.1855653307 - - PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
8 Hb_000723_350 0.1864952673 - - protein binding protein, putative [Ricinus communis]
9 Hb_000008_370 0.1867034501 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
10 Hb_000186_270 0.1925159006 - - hypothetical protein JCGZ_02112 [Jatropha curcas]
11 Hb_001863_120 0.1952603446 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_001541_110 0.1953775013 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_009771_060 0.1954934277 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
14 Hb_004994_080 0.1955755312 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001623_100 0.1975671443 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
16 Hb_008375_030 0.1979012714 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
17 Hb_002837_050 0.1983488519 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
18 Hb_006588_190 0.2001971159 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
19 Hb_003556_030 0.2011255795 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
20 Hb_000905_120 0.2015512421 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]

Gene co-expression network

sample Hb_002175_020 Hb_002175_020 Hb_002194_050 Hb_002194_050 Hb_002175_020--Hb_002194_050 Hb_004129_090 Hb_004129_090 Hb_002175_020--Hb_004129_090 Hb_007451_040 Hb_007451_040 Hb_002175_020--Hb_007451_040 Hb_000260_430 Hb_000260_430 Hb_002175_020--Hb_000260_430 Hb_007263_010 Hb_007263_010 Hb_002175_020--Hb_007263_010 Hb_000808_110 Hb_000808_110 Hb_002175_020--Hb_000808_110 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_009771_060 Hb_009771_060 Hb_002194_050--Hb_009771_060 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_004994_080 Hb_004994_080 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_014497_100 Hb_014497_100 Hb_004129_090--Hb_014497_100 Hb_001178_010 Hb_001178_010 Hb_004129_090--Hb_001178_010 Hb_010098_020 Hb_010098_020 Hb_004129_090--Hb_010098_020 Hb_002316_140 Hb_002316_140 Hb_004129_090--Hb_002316_140 Hb_001623_100 Hb_001623_100 Hb_004129_090--Hb_001623_100 Hb_001541_110 Hb_001541_110 Hb_004129_090--Hb_001541_110 Hb_007451_040--Hb_007263_010 Hb_007451_040--Hb_001541_110 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_006555_040 Hb_006555_040 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110 Hb_000260_430--Hb_007451_040 Hb_011310_140 Hb_011310_140 Hb_000260_430--Hb_011310_140 Hb_006787_090 Hb_006787_090 Hb_000260_430--Hb_006787_090 Hb_000976_190 Hb_000976_190 Hb_000260_430--Hb_000976_190 Hb_000723_350 Hb_000723_350 Hb_000260_430--Hb_000723_350 Hb_000311_120 Hb_000311_120 Hb_000260_430--Hb_000311_120 Hb_007263_010--Hb_004994_080 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_000836_350 Hb_000836_350 Hb_000808_110--Hb_000836_350 Hb_008494_030 Hb_008494_030 Hb_000808_110--Hb_008494_030 Hb_006569_040 Hb_006569_040 Hb_000808_110--Hb_006569_040 Hb_002107_050 Hb_002107_050 Hb_000808_110--Hb_002107_050 Hb_001623_490 Hb_001623_490 Hb_000808_110--Hb_001623_490 Hb_000331_340 Hb_000331_340 Hb_000808_110--Hb_000331_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.493782 0.269992 1.54895 0.53978 0.237579 0.117684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.349009 0.823246 0 0.266814 0.879097

CAGE analysis