Hb_002035_070

Information

Type -
Description -
Location Contig2035: 93192-95291
Sequence    

Annotation

kegg
ID cic:CICLE_v10033569mg
description hypothetical protein
nr
ID XP_006437107.1
description hypothetical protein CICLE_v10033569mg [Citrus clementina]
swissprot
ID Q25338
description Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1
trembl
ID V4TAQ6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033569mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20848: 92960-93416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_070 0.0 - - hypothetical protein CICLE_v10033569mg [Citrus clementina]
2 Hb_003038_010 0.2443922666 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000220_090 0.2505409285 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
4 Hb_007429_020 0.2555618024 - - kinase, putative [Ricinus communis]
5 Hb_004324_290 0.257648574 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
6 Hb_048653_020 0.2579157548 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000700_100 0.2602007348 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
8 Hb_075449_030 0.2619798914 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
9 Hb_000103_400 0.2622225717 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
10 Hb_000434_050 0.2638816643 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
11 Hb_000181_080 0.264219036 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
12 Hb_102100_010 0.2660801182 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000015_180 0.2668824192 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
14 Hb_006916_200 0.2688595351 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
15 Hb_138575_010 0.2702429149 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_013057_030 0.2726028036 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003097_090 0.2761431424 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007379_020 0.2773061253 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
19 Hb_000574_120 0.2787290101 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001277_140 0.279569808 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]

Gene co-expression network

sample Hb_002035_070 Hb_002035_070 Hb_003038_010 Hb_003038_010 Hb_002035_070--Hb_003038_010 Hb_000220_090 Hb_000220_090 Hb_002035_070--Hb_000220_090 Hb_007429_020 Hb_007429_020 Hb_002035_070--Hb_007429_020 Hb_004324_290 Hb_004324_290 Hb_002035_070--Hb_004324_290 Hb_048653_020 Hb_048653_020 Hb_002035_070--Hb_048653_020 Hb_000700_100 Hb_000700_100 Hb_002035_070--Hb_000700_100 Hb_003038_010--Hb_000220_090 Hb_000015_180 Hb_000015_180 Hb_003038_010--Hb_000015_180 Hb_001258_150 Hb_001258_150 Hb_003038_010--Hb_001258_150 Hb_001546_110 Hb_001546_110 Hb_003038_010--Hb_001546_110 Hb_009838_060 Hb_009838_060 Hb_003038_010--Hb_009838_060 Hb_003494_060 Hb_003494_060 Hb_003038_010--Hb_003494_060 Hb_000220_090--Hb_000015_180 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_000220_090--Hb_102100_010 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_000181_080 Hb_000181_080 Hb_007429_020--Hb_000181_080 Hb_000003_420 Hb_000003_420 Hb_007429_020--Hb_000003_420 Hb_008380_010 Hb_008380_010 Hb_007429_020--Hb_008380_010 Hb_000359_080 Hb_000359_080 Hb_007429_020--Hb_000359_080 Hb_029866_050 Hb_029866_050 Hb_007429_020--Hb_029866_050 Hb_004531_010 Hb_004531_010 Hb_007429_020--Hb_004531_010 Hb_000574_120 Hb_000574_120 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_002918_150 Hb_002918_150 Hb_048653_020--Hb_002918_150 Hb_138575_010 Hb_138575_010 Hb_048653_020--Hb_138575_010 Hb_013057_030 Hb_013057_030 Hb_048653_020--Hb_013057_030 Hb_002217_440 Hb_002217_440 Hb_048653_020--Hb_002217_440 Hb_003086_050 Hb_003086_050 Hb_048653_020--Hb_003086_050 Hb_002272_140 Hb_002272_140 Hb_048653_020--Hb_002272_140 Hb_007747_120 Hb_007747_120 Hb_000700_100--Hb_007747_120 Hb_000563_460 Hb_000563_460 Hb_000700_100--Hb_000563_460 Hb_001504_270 Hb_001504_270 Hb_000700_100--Hb_001504_270 Hb_002760_060 Hb_002760_060 Hb_000700_100--Hb_002760_060 Hb_003053_060 Hb_003053_060 Hb_000700_100--Hb_003053_060 Hb_000700_100--Hb_003086_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307809 2.73309 0.175541 0.334695 0.0316681 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.023964 0.0188552 0.571227 0.187635 0.079565

CAGE analysis