Hb_001716_030

Information

Type -
Description -
Location Contig1716: 40500-42193
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03360g
description hypothetical protein
nr
ID XP_012071693.1
description PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9MVL2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001716_030 0.0 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
2 Hb_003768_020 0.2002375952 - - PREDICTED: uncharacterized protein LOC105644157 [Jatropha curcas]
3 Hb_005269_020 0.2170798461 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
4 Hb_029576_060 0.2194336949 - - PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
5 Hb_002662_060 0.2201232153 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
6 Hb_003581_230 0.2289088568 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
7 Hb_000056_030 0.2328797344 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
8 Hb_000438_160 0.2360578154 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000932_110 0.2369827435 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_001729_030 0.2389341938 - - hypothetical protein VITISV_044457 [Vitis vinifera]
11 Hb_004108_180 0.2400853494 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
12 Hb_000925_150 0.2477791023 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
13 Hb_002443_010 0.2526566352 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_000017_200 0.2528351295 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
15 Hb_103990_010 0.2529350518 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
16 Hb_001606_020 0.2555841908 - - PREDICTED: cell number regulator 2-like [Malus domestica]
17 Hb_000061_430 0.2559336984 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001439_080 0.263882168 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_004375_120 0.2673224185 - - PREDICTED: dnaJ homolog subfamily B member 3-like [Jatropha curcas]
20 Hb_004143_090 0.268092388 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001716_030 Hb_001716_030 Hb_003768_020 Hb_003768_020 Hb_001716_030--Hb_003768_020 Hb_005269_020 Hb_005269_020 Hb_001716_030--Hb_005269_020 Hb_029576_060 Hb_029576_060 Hb_001716_030--Hb_029576_060 Hb_002662_060 Hb_002662_060 Hb_001716_030--Hb_002662_060 Hb_003581_230 Hb_003581_230 Hb_001716_030--Hb_003581_230 Hb_000056_030 Hb_000056_030 Hb_001716_030--Hb_000056_030 Hb_001729_030 Hb_001729_030 Hb_003768_020--Hb_001729_030 Hb_003768_020--Hb_003581_230 Hb_004220_010 Hb_004220_010 Hb_003768_020--Hb_004220_010 Hb_000622_050 Hb_000622_050 Hb_003768_020--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_003768_020--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_003768_020--Hb_000976_400 Hb_004108_180 Hb_004108_180 Hb_005269_020--Hb_004108_180 Hb_007120_120 Hb_007120_120 Hb_005269_020--Hb_007120_120 Hb_000189_300 Hb_000189_300 Hb_005269_020--Hb_000189_300 Hb_000840_080 Hb_000840_080 Hb_005269_020--Hb_000840_080 Hb_008021_060 Hb_008021_060 Hb_005269_020--Hb_008021_060 Hb_009663_020 Hb_009663_020 Hb_005269_020--Hb_009663_020 Hb_029576_060--Hb_003581_230 Hb_002276_220 Hb_002276_220 Hb_029576_060--Hb_002276_220 Hb_000163_190 Hb_000163_190 Hb_029576_060--Hb_000163_190 Hb_034235_010 Hb_034235_010 Hb_029576_060--Hb_034235_010 Hb_000608_270 Hb_000608_270 Hb_029576_060--Hb_000608_270 Hb_002704_060 Hb_002704_060 Hb_029576_060--Hb_002704_060 Hb_126714_010 Hb_126714_010 Hb_002662_060--Hb_126714_010 Hb_006588_140 Hb_006588_140 Hb_002662_060--Hb_006588_140 Hb_005833_010 Hb_005833_010 Hb_002662_060--Hb_005833_010 Hb_001426_020 Hb_001426_020 Hb_002662_060--Hb_001426_020 Hb_009225_060 Hb_009225_060 Hb_002662_060--Hb_009225_060 Hb_000487_080 Hb_000487_080 Hb_002662_060--Hb_000487_080 Hb_003581_230--Hb_004220_010 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_003581_230--Hb_000976_400 Hb_000032_360 Hb_000032_360 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000056_030--Hb_000032_360 Hb_011033_010 Hb_011033_010 Hb_000056_030--Hb_011033_010 Hb_000056_030--Hb_003581_230 Hb_000925_150 Hb_000925_150 Hb_000056_030--Hb_000925_150 Hb_012055_080 Hb_012055_080 Hb_000056_030--Hb_012055_080 Hb_005890_020 Hb_005890_020 Hb_000056_030--Hb_005890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0193047 0 0.192451 0.139069 0.0580754 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.143104

CAGE analysis