Hb_002662_060

Information

Type -
Description -
Location Contig2662: 76552-77865
Sequence    

Annotation

kegg
ID tcc:TCM_033778
description LRR-family protein
nr
ID XP_012068299.1
description PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067LC88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16101 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_060 0.0 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
2 Hb_126714_010 0.1103278762 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
3 Hb_006588_140 0.1111864766 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
4 Hb_005833_010 0.1163105923 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
5 Hb_001426_020 0.121251617 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
6 Hb_009225_060 0.1254305977 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
7 Hb_000487_080 0.125510404 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
8 Hb_000915_170 0.1272505732 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
9 Hb_163566_010 0.1276085882 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
10 Hb_004880_020 0.1283624246 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
11 Hb_016734_100 0.1338215621 - - -
12 Hb_001534_130 0.1356857575 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
13 Hb_000358_260 0.1369209367 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
14 Hb_001642_020 0.13701328 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
15 Hb_189208_070 0.1371449526 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
16 Hb_000077_020 0.138578916 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009233_020 0.1391981683 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
18 Hb_010577_020 0.1399740231 - - -
19 Hb_006816_380 0.1405201163 - - PREDICTED: kinesin-4-like [Jatropha curcas]
20 Hb_185811_010 0.1460693955 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002662_060 Hb_002662_060 Hb_126714_010 Hb_126714_010 Hb_002662_060--Hb_126714_010 Hb_006588_140 Hb_006588_140 Hb_002662_060--Hb_006588_140 Hb_005833_010 Hb_005833_010 Hb_002662_060--Hb_005833_010 Hb_001426_020 Hb_001426_020 Hb_002662_060--Hb_001426_020 Hb_009225_060 Hb_009225_060 Hb_002662_060--Hb_009225_060 Hb_000487_080 Hb_000487_080 Hb_002662_060--Hb_000487_080 Hb_126714_010--Hb_006588_140 Hb_126714_010--Hb_005833_010 Hb_126714_010--Hb_009225_060 Hb_126714_010--Hb_001426_020 Hb_163566_010 Hb_163566_010 Hb_126714_010--Hb_163566_010 Hb_000358_260 Hb_000358_260 Hb_126714_010--Hb_000358_260 Hb_006588_140--Hb_005833_010 Hb_006588_140--Hb_009225_060 Hb_006588_140--Hb_001426_020 Hb_006588_140--Hb_000358_260 Hb_001534_130 Hb_001534_130 Hb_006588_140--Hb_001534_130 Hb_005833_010--Hb_163566_010 Hb_010577_020 Hb_010577_020 Hb_005833_010--Hb_010577_020 Hb_005833_010--Hb_000358_260 Hb_005833_010--Hb_001426_020 Hb_001426_020--Hb_000487_080 Hb_016734_100 Hb_016734_100 Hb_001426_020--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_001426_020--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_001426_020--Hb_001031_140 Hb_001426_020--Hb_163566_010 Hb_009233_020 Hb_009233_020 Hb_009225_060--Hb_009233_020 Hb_004880_020 Hb_004880_020 Hb_009225_060--Hb_004880_020 Hb_000077_020 Hb_000077_020 Hb_009225_060--Hb_000077_020 Hb_003734_070 Hb_003734_070 Hb_009225_060--Hb_003734_070 Hb_085682_010 Hb_085682_010 Hb_009225_060--Hb_085682_010 Hb_000487_080--Hb_016734_100 Hb_000487_080--Hb_001642_020 Hb_000487_080--Hb_001031_140 Hb_012035_010 Hb_012035_010 Hb_000487_080--Hb_012035_010 Hb_000487_080--Hb_163566_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.197741 0.224295 0.0160048 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.238372

CAGE analysis