Hb_001033_070

Information

Type -
Description -
Location Contig1033: 198243-200671
Sequence    

Annotation

kegg
ID rcu:RCOM_1564380
description seryl-tRNA synthetase, putative (EC:6.1.1.11)
nr
ID XP_002514398.1
description seryl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID O81983
description Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1
trembl
ID B9RKX9
description Seryl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_1564380 PE=3 SV=1
Gene Ontology
ID GO:0016874
description serine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001033_070 0.0 - - seryl-tRNA synthetase, putative [Ricinus communis]
2 Hb_000381_010 0.1571615532 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
3 Hb_000417_170 0.1763504353 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
4 Hb_000106_030 0.179189276 - - amino acid transporter, putative [Ricinus communis]
5 Hb_000836_060 0.1849834821 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
6 Hb_007576_060 0.1857170262 - - -
7 Hb_002527_040 0.1909672949 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
8 Hb_000086_390 0.1912123037 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
9 Hb_009252_010 0.1922961017 - - PREDICTED: kinesin light chain [Jatropha curcas]
10 Hb_005228_040 0.1956952262 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
11 Hb_000300_410 0.1966361127 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
12 Hb_030959_010 0.2033649777 - - cullin, putative [Ricinus communis]
13 Hb_001546_010 0.2038167927 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000390_030 0.2053083291 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
15 Hb_003778_020 0.2056900377 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_015675_030 0.2073666467 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
17 Hb_002611_010 0.2077896741 - - amino acid transporter, putative [Ricinus communis]
18 Hb_010288_060 0.2081236741 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
19 Hb_005348_110 0.2096238474 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
20 Hb_000656_330 0.2103108636 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_001033_070 Hb_001033_070 Hb_000381_010 Hb_000381_010 Hb_001033_070--Hb_000381_010 Hb_000417_170 Hb_000417_170 Hb_001033_070--Hb_000417_170 Hb_000106_030 Hb_000106_030 Hb_001033_070--Hb_000106_030 Hb_000836_060 Hb_000836_060 Hb_001033_070--Hb_000836_060 Hb_007576_060 Hb_007576_060 Hb_001033_070--Hb_007576_060 Hb_002527_040 Hb_002527_040 Hb_001033_070--Hb_002527_040 Hb_001142_010 Hb_001142_010 Hb_000381_010--Hb_001142_010 Hb_000656_330 Hb_000656_330 Hb_000381_010--Hb_000656_330 Hb_000946_110 Hb_000946_110 Hb_000381_010--Hb_000946_110 Hb_015675_030 Hb_015675_030 Hb_000381_010--Hb_015675_030 Hb_000381_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_000381_010--Hb_010288_060 Hb_030959_010 Hb_030959_010 Hb_000417_170--Hb_030959_010 Hb_009252_010 Hb_009252_010 Hb_000417_170--Hb_009252_010 Hb_003746_010 Hb_003746_010 Hb_000417_170--Hb_003746_010 Hb_004097_090 Hb_004097_090 Hb_000417_170--Hb_004097_090 Hb_000445_150 Hb_000445_150 Hb_000417_170--Hb_000445_150 Hb_005348_110 Hb_005348_110 Hb_000417_170--Hb_005348_110 Hb_000106_030--Hb_000836_060 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_132840_070 Hb_132840_070 Hb_000106_030--Hb_132840_070 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_000836_060--Hb_030959_010 Hb_002611_010 Hb_002611_010 Hb_000836_060--Hb_002611_010 Hb_009674_050 Hb_009674_050 Hb_000836_060--Hb_009674_050 Hb_001473_170 Hb_001473_170 Hb_000836_060--Hb_001473_170 Hb_000836_060--Hb_005348_110 Hb_005228_040 Hb_005228_040 Hb_007576_060--Hb_005228_040 Hb_007576_060--Hb_000417_170 Hb_000984_210 Hb_000984_210 Hb_007576_060--Hb_000984_210 Hb_003642_010 Hb_003642_010 Hb_007576_060--Hb_003642_010 Hb_007576_060--Hb_009252_010 Hb_000086_390 Hb_000086_390 Hb_002527_040--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_002527_040--Hb_002780_030 Hb_001916_150 Hb_001916_150 Hb_002527_040--Hb_001916_150 Hb_026314_030 Hb_026314_030 Hb_002527_040--Hb_026314_030 Hb_000032_400 Hb_000032_400 Hb_002527_040--Hb_000032_400 Hb_008179_010 Hb_008179_010 Hb_002527_040--Hb_008179_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022318 0.260465 0.083585 1.16044 0.0209193 0.162343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.204487 0.361862 0.369859 0.274921 1.3976

CAGE analysis