Hb_000922_380

Information

Type -
Description -
Location Contig922: 304629-310122
Sequence    

Annotation

kegg
ID rcu:RCOM_1510390
description U3 small nucleolar ribonucleoprotein protein mpp10, putative
nr
ID XP_012080043.1
description PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
swissprot
ID O00566
description U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2
trembl
ID A0A067K4L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11458 PE=4 SV=1
Gene Ontology
ID GO:0005730
description u3 small nucleolar ribonucleoprotein protein mpp10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62514: 304741-305364 , PASA_asmbl_62515: 308075-309021 , PASA_asmbl_62516: 309805-310179 , PASA_asmbl_62517: 309757-310189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_380 0.0 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
2 Hb_001008_120 0.0814741957 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
3 Hb_001357_020 0.0848156812 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
4 Hb_003020_030 0.0881414745 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
5 Hb_000053_040 0.0881837363 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
6 Hb_025193_040 0.0910505149 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
7 Hb_019337_020 0.0919279895 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
8 Hb_000406_200 0.0924262184 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
9 Hb_056691_060 0.092509502 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
10 Hb_008387_020 0.0943105499 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
11 Hb_002600_150 0.0958135851 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
12 Hb_007317_140 0.0969601645 - - expressed protein, putative [Ricinus communis]
13 Hb_001417_030 0.0969805207 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_000922_030 0.0974855598 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
15 Hb_122968_010 0.098661238 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
16 Hb_001227_080 0.1009884777 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000872_010 0.1018612244 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
18 Hb_028912_050 0.1019520084 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
19 Hb_001062_010 0.1019762878 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
20 Hb_027073_020 0.1021533549 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_380 Hb_000922_380 Hb_001008_120 Hb_001008_120 Hb_000922_380--Hb_001008_120 Hb_001357_020 Hb_001357_020 Hb_000922_380--Hb_001357_020 Hb_003020_030 Hb_003020_030 Hb_000922_380--Hb_003020_030 Hb_000053_040 Hb_000053_040 Hb_000922_380--Hb_000053_040 Hb_025193_040 Hb_025193_040 Hb_000922_380--Hb_025193_040 Hb_019337_020 Hb_019337_020 Hb_000922_380--Hb_019337_020 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_002600_150 Hb_002600_150 Hb_001357_020--Hb_002600_150 Hb_002518_260 Hb_002518_260 Hb_001357_020--Hb_002518_260 Hb_000388_090 Hb_000388_090 Hb_001357_020--Hb_000388_090 Hb_029510_050 Hb_029510_050 Hb_001357_020--Hb_029510_050 Hb_000976_300 Hb_000976_300 Hb_001357_020--Hb_000976_300 Hb_001357_020--Hb_001008_120 Hb_000025_270 Hb_000025_270 Hb_003020_030--Hb_000025_270 Hb_003020_030--Hb_001008_120 Hb_036790_080 Hb_036790_080 Hb_003020_030--Hb_036790_080 Hb_001936_090 Hb_001936_090 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_006483_110 Hb_006483_110 Hb_003020_030--Hb_006483_110 Hb_000053_040--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_000053_040--Hb_000138_100 Hb_056691_060 Hb_056691_060 Hb_000053_040--Hb_056691_060 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_003734_010 Hb_003734_010 Hb_000053_040--Hb_003734_010 Hb_002025_330 Hb_002025_330 Hb_025193_040--Hb_002025_330 Hb_004143_160 Hb_004143_160 Hb_025193_040--Hb_004143_160 Hb_001963_100 Hb_001963_100 Hb_025193_040--Hb_001963_100 Hb_001440_030 Hb_001440_030 Hb_025193_040--Hb_001440_030 Hb_000922_030 Hb_000922_030 Hb_025193_040--Hb_000922_030 Hb_000872_010 Hb_000872_010 Hb_025193_040--Hb_000872_010 Hb_001227_080 Hb_001227_080 Hb_019337_020--Hb_001227_080 Hb_000358_050 Hb_000358_050 Hb_019337_020--Hb_000358_050 Hb_007818_010 Hb_007818_010 Hb_019337_020--Hb_007818_010 Hb_009296_040 Hb_009296_040 Hb_019337_020--Hb_009296_040 Hb_002639_080 Hb_002639_080 Hb_019337_020--Hb_002639_080 Hb_019337_020--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28886 2.53311 2.27292 3.32985 4.20394 3.9179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24798 3.78349 3.67022 6.38263 7.04815

CAGE analysis