Hb_000755_040

Information

Type -
Description -
Location Contig755: 34815-41713
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15430g
description POPTRDRAFT_807630; early-responsive to dehydration family protein
nr
ID XP_002321139.1
description early-responsive to dehydration family protein [Populus trichocarpa]
swissprot
ID Q9LVE4
description CSC1-like protein At3g21620 OS=Arabidopsis thaliana GN=At3g21620 PE=2 SV=1
trembl
ID B9IAI0
description Early-responsive to dehydration family protein OS=Populus trichocarpa GN=POPTR_0014s15430g PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at3g21620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000755_040 0.0 - - early-responsive to dehydration family protein [Populus trichocarpa]
2 Hb_182167_010 0.1927211941 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
3 Hb_183192_010 0.1988157293 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
4 Hb_001638_120 0.204351427 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
5 Hb_001369_670 0.2090757412 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
6 Hb_029689_010 0.2125092912 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_000059_260 0.2130944312 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
8 Hb_011918_030 0.2143990996 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
9 Hb_003175_060 0.214404248 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
10 Hb_012496_020 0.2159856116 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002007_070 0.2159858734 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
12 Hb_004837_200 0.2163398817 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
13 Hb_000959_020 0.2164495171 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_001775_090 0.2167665711 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
15 Hb_000172_410 0.219021171 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_002498_250 0.2199091354 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_000680_180 0.2203805081 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
18 Hb_186995_010 0.2215803119 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
19 Hb_005381_010 0.2250824128 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
20 Hb_189208_060 0.2272163744 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000755_040 Hb_000755_040 Hb_182167_010 Hb_182167_010 Hb_000755_040--Hb_182167_010 Hb_183192_010 Hb_183192_010 Hb_000755_040--Hb_183192_010 Hb_001638_120 Hb_001638_120 Hb_000755_040--Hb_001638_120 Hb_001369_670 Hb_001369_670 Hb_000755_040--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_000755_040--Hb_029689_010 Hb_000059_260 Hb_000059_260 Hb_000755_040--Hb_000059_260 Hb_005381_010 Hb_005381_010 Hb_182167_010--Hb_005381_010 Hb_012496_020 Hb_012496_020 Hb_182167_010--Hb_012496_020 Hb_003060_150 Hb_003060_150 Hb_182167_010--Hb_003060_150 Hb_000069_530 Hb_000069_530 Hb_182167_010--Hb_000069_530 Hb_121540_010 Hb_121540_010 Hb_182167_010--Hb_121540_010 Hb_001153_250 Hb_001153_250 Hb_182167_010--Hb_001153_250 Hb_009979_010 Hb_009979_010 Hb_183192_010--Hb_009979_010 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_001628_020 Hb_001628_020 Hb_183192_010--Hb_001628_020 Hb_183192_010--Hb_001369_670 Hb_183192_010--Hb_029689_010 Hb_012022_020 Hb_012022_020 Hb_183192_010--Hb_012022_020 Hb_011918_030 Hb_011918_030 Hb_001638_120--Hb_011918_030 Hb_004223_080 Hb_004223_080 Hb_001638_120--Hb_004223_080 Hb_001025_140 Hb_001025_140 Hb_001638_120--Hb_001025_140 Hb_003688_220 Hb_003688_220 Hb_001638_120--Hb_003688_220 Hb_000134_260 Hb_000134_260 Hb_001638_120--Hb_000134_260 Hb_107078_010 Hb_107078_010 Hb_001638_120--Hb_107078_010 Hb_000172_410 Hb_000172_410 Hb_001369_670--Hb_000172_410 Hb_003078_070 Hb_003078_070 Hb_001369_670--Hb_003078_070 Hb_160653_010 Hb_160653_010 Hb_001369_670--Hb_160653_010 Hb_001369_670--Hb_003060_150 Hb_004837_200 Hb_004837_200 Hb_001369_670--Hb_004837_200 Hb_001369_670--Hb_121540_010 Hb_029689_010--Hb_000059_260 Hb_002311_150 Hb_002311_150 Hb_029689_010--Hb_002311_150 Hb_074184_010 Hb_074184_010 Hb_029689_010--Hb_074184_010 Hb_007120_010 Hb_007120_010 Hb_029689_010--Hb_007120_010 Hb_033149_020 Hb_033149_020 Hb_029689_010--Hb_033149_020 Hb_010964_010 Hb_010964_010 Hb_000059_260--Hb_010964_010 Hb_002960_100 Hb_002960_100 Hb_000059_260--Hb_002960_100 Hb_000819_040 Hb_000819_040 Hb_000059_260--Hb_000819_040 Hb_001310_010 Hb_001310_010 Hb_000059_260--Hb_001310_010 Hb_181810_010 Hb_181810_010 Hb_000059_260--Hb_181810_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150871 0.126839 0.155334 0.0705855 0 0.0207452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0286514

CAGE analysis