Hb_000252_220

Information

Type -
Description -
Location Contig252: 181468-183520
Sequence    

Annotation

kegg
ID cic:CICLE_v10030749mg
description hypothetical protein
nr
ID XP_010678857.1
description PREDICTED: copper amine oxidase 1-like isoform X2 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID B8AEQ6
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07883 PE=3 SV=1
Gene Ontology
ID GO:0005507
description copper amine oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_220 0.0 - - PREDICTED: copper amine oxidase 1-like isoform X2 [Beta vulgaris subsp. vulgaris]
2 Hb_001904_050 0.2144342378 - - alpha-tubulin 1 [Hevea brasiliensis]
3 Hb_001597_050 0.2159930627 - - -
4 Hb_000496_110 0.2166064001 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
5 Hb_001369_630 0.2200584971 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
6 Hb_058620_060 0.2222499023 - - uncharacterized protein LOC105646159 precursor [Jatropha curcas]
7 Hb_000331_350 0.2258088221 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
8 Hb_000935_040 0.2259661595 - - Uncharacterized protein isoform 2 [Theobroma cacao]
9 Hb_188281_030 0.2277271213 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
10 Hb_003408_010 0.229665036 - - fructokinase [Manihot esculenta]
11 Hb_001584_240 0.232526097 - - ADP-ribosylation factor [Gossypium barbadense]
12 Hb_006711_090 0.2328028694 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
13 Hb_000765_060 0.2335161422 - - Alcohol dehydrogenase-like 6 [Glycine soja]
14 Hb_000256_080 0.2355331748 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
15 Hb_000206_230 0.236168197 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033152_120 0.2412532563 - - PREDICTED: la-related protein 6C [Jatropha curcas]
17 Hb_017439_010 0.2424250426 - - putative actin-97 protein [Linum usitatissimum]
18 Hb_020805_140 0.2440307246 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
19 Hb_002498_030 0.2452207952 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002316_080 0.2456871956 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]

Gene co-expression network

sample Hb_000252_220 Hb_000252_220 Hb_001904_050 Hb_001904_050 Hb_000252_220--Hb_001904_050 Hb_001597_050 Hb_001597_050 Hb_000252_220--Hb_001597_050 Hb_000496_110 Hb_000496_110 Hb_000252_220--Hb_000496_110 Hb_001369_630 Hb_001369_630 Hb_000252_220--Hb_001369_630 Hb_058620_060 Hb_058620_060 Hb_000252_220--Hb_058620_060 Hb_000331_350 Hb_000331_350 Hb_000252_220--Hb_000331_350 Hb_031527_110 Hb_031527_110 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_000742_020 Hb_000742_020 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_007441_080 Hb_007441_080 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_001584_240 Hb_001584_240 Hb_001597_050--Hb_001584_240 Hb_000740_150 Hb_000740_150 Hb_001597_050--Hb_000740_150 Hb_001486_270 Hb_001486_270 Hb_001597_050--Hb_001486_270 Hb_000776_060 Hb_000776_060 Hb_001597_050--Hb_000776_060 Hb_000483_400 Hb_000483_400 Hb_001597_050--Hb_000483_400 Hb_003875_010 Hb_003875_010 Hb_001597_050--Hb_003875_010 Hb_002316_080 Hb_002316_080 Hb_000496_110--Hb_002316_080 Hb_000246_130 Hb_000246_130 Hb_000496_110--Hb_000246_130 Hb_000300_410 Hb_000300_410 Hb_000496_110--Hb_000300_410 Hb_001989_100 Hb_001989_100 Hb_000496_110--Hb_001989_100 Hb_011310_040 Hb_011310_040 Hb_000496_110--Hb_011310_040 Hb_000107_350 Hb_000107_350 Hb_000496_110--Hb_000107_350 Hb_000935_040 Hb_000935_040 Hb_001369_630--Hb_000935_040 Hb_000696_070 Hb_000696_070 Hb_001369_630--Hb_000696_070 Hb_002007_320 Hb_002007_320 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_000049_160 Hb_000049_160 Hb_001369_630--Hb_000049_160 Hb_002539_100 Hb_002539_100 Hb_058620_060--Hb_002539_100 Hb_001124_100 Hb_001124_100 Hb_058620_060--Hb_001124_100 Hb_001606_060 Hb_001606_060 Hb_058620_060--Hb_001606_060 Hb_027073_010 Hb_027073_010 Hb_058620_060--Hb_027073_010 Hb_011671_080 Hb_011671_080 Hb_058620_060--Hb_011671_080 Hb_010172_110 Hb_010172_110 Hb_000331_350--Hb_010172_110 Hb_188281_030 Hb_188281_030 Hb_000331_350--Hb_188281_030 Hb_000310_120 Hb_000310_120 Hb_000331_350--Hb_000310_120 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000406_030 Hb_000406_030 Hb_000331_350--Hb_000406_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245727 0 0.731102 1.3453 0.0578114 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144148 0.452941 0.190081 0.1891 0.419187

CAGE analysis